Gene omics information

Query gene ID	GmaAffx.90026.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.60	80.7	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	S.X.	H.G.	Please select
0.57	78.8	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.55	76.3	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.90789.1.S1_s_at	CF806514	-	-	1e+0	At5g58990	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.8	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM292913	86_1447.1L.R273L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293025	2_C027.1N.V7N2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM294323	72_3157.2I.V7I3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292912	85_1467.1L.R284L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM244928	7_V71.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	0	1005	Gma.11238.1.S1_a_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.37	0	1005	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.72258.1.S1_at	BF067925	-	-	1e-15	At4g21750	ATML1 (MERISTEM LAYER 1)	C.G.	S.X.	Please select
0.04	4e-1	36	Gma.389.1.A1_at	AW349686	-	-	3e+0	At5g14920	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.C71000080_at	PsAffx.C71000080	-	-	1e+0	At3g04970	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C299000008_at	PsAffx.C299000008	-	-	1e+0	At4g24805	methyltransferase	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C260000002_at	PsAffx.C260000002	-	-	8e-2	At1g09250	transcription factor	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C1000264_at	PsAffx.C1000264	-	-	2e-1	At1g78520	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.69322.2.S1_at	BI470205	-	-	8e-14	At5g14880	potassium transporter, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-18	91	Arabidopsis thaliana	At5g60600	836181	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-17	87	Hordeum vulgare	Contig3822_at	Contig3822	-	-	6e-43	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.17	4e-20	99	Oryza sativa	Os02g0603800	AK120769.1	-	Isoprenoid biosynthesis-like protein (Fragment)	6e-86	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	2e-37	157	Populus trichocarpa	PtpAffx.33034.1.S1_at	CK090128	hypothetical protein	-	1e-30	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-15	83	Triticum aestivum	Ta.10120.1.S1_at	BJ224992	-	-	6e-14	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.59	1e-89	327	Vitis vinifera	1613715_at	CF211315	hypothetical protein LOC100257071	-	9e-21	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.09	6e-16	83	Zea mays	Zm.10841.1.A1_at	BQ619556	hydroxymethylbutenyl 4-diphosphate synthase	-	2e-64	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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