Gene omics information

Query gene ID	GmaAffx.8999.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.8999.1.S1_at	CD403960	-	-	1e-32	At5g25760	PEX4 (PEROXIN4)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92802.1.S1_s_at	CF806550	-	-	8e-33	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.8927.1.S1_at	AW349333	-	-	5e-32	At4g39100	SHL1 (short life)	S.X.	H.G.	Please select
0.50	71.7	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.44	63.3	Gma.6207.1.S1_s_at	CF922738	-	-	7e-16	At4g19640	ARA7	S.X.	H.G.	Please select
0.35	48.6	Gma.5720.1.S1_s_at	AW348669	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	96.4	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM292868	45_1470.1L.R285P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM292192	53-1026.1A.R014P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293838	78_3062.2D.SLD2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294114	6_3114.2G.SLG1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294093	50_3120.2G.V7G2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293757	89_3048.2C.V7C2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293696	33_3052.2C.V7C3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	3e-55	216	Gma.14847.1.A1_at	BE019978	-	-	8e-1	At3g11050	ATFER2 (ferritin 2)	C.G.	S.X.	Please select
0.13	9e-34	145	GmaAffx.8999.2.A1_x_at	BI700574	-	-	2e+0	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.13	9e-34	145	GmaAffx.8999.2.A1_s_at	BI700574	-	-	2e+0	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.13	9e-34	145	GmaAffx.8999.2.A1_at	BI700574	-	-	2e+0	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	6e-1	36	GmaAffx.78435.1.S1_at	BM954729	-	-	1e+1	Atmg00710	-	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C11000045_s_at	PsAffx.C11000045	-	-	1e-1	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	GmaAffx.78983.1.S1_at	BU765177	-	-	8e-1	At5g43480	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.6835.1.S1_at	BU545305	-	-	1e-3	At1g68730	zinc finger (DNL type) family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.5516.1.S1_at	BG157124	-	-	6e-1	At4g36540	BEE2 (BR Enhanced Expression 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-32	141	Arabidopsis thaliana	At5g25760	832645	PEX4 (PEROXIN4)	mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	34	Hordeum vulgare	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.44	1e-67	258	Oryza sativa	Os02g0634800	AK059694.1	-	Ubiquitin-conjugating enzymes domain containingprotein	3e-42	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	2e-115	416	Populus trichocarpa	Ptp.794.1.S1_s_at	CV240249	hypothetical protein	-	2e-67	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-44	180	Triticum aestivum	Ta.1026.3.S1_x_at	CA700666	-	-	4e-26	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please select
0.43	1e-103	375	Vitis vinifera	1610542_at	CB972194	hypothetical protein LOC100254379	-	8e-83	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please select
0.40	3e-68	258	Zea mays	Zm.14408.1.A1_a_at	BM336357	hypothetical protein LOC100191818 /// ubiquitin-conjugating enzyme E2 16	-	1e-44	At5g25760	PEX4 (PEROXIN4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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