Gene omics information

Query gene ID	GmaAffx.89972.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	93.5	GmaAffx.89972.1.S1_s_at	CF805697	-	-	6e-5	At2g43590	chitinase, putative	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.18924.1.S1_at	BU546215	-	-	1e-5	At2g18950	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.64	83.4	GmaAffx.42847.1.S1_s_at	BU578388	-	-	5e-12	At2g14580	ATPRB1	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.494.1.S1_at	AI938330	-	-	1e+0	At5g41420	unknown protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.36484.1.S1_s_at	BI425441	-	-	3e-5	At2g14580	ATPRB1	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.90538.1.A1_s_at	CF806263	-	-	8e-2	At2g24810	pathogenesis-related thaumatin family protein	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.18769.1.S1_at	BI972364	-	-	3e+0	At2g24285	-	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.41414.1.S1_s_at	BU766008	-	-	3e+0	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.55244.2.S1_at	BI893826	-	-	1e-3	At5g49700	DNA-binding protein-related	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.52146.1.S1_at	CA934966	-	-	2e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.9	99.9	GSM293546	60_2021.2A.R275L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
30.6	99.8	GSM293527	43_2015.2A.R250L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.4	99.8	GSM294521	83_2487.2K.R111L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.3	99.8	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
20.8	99.7	GSM294238	87_2337.2H.R240L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.5	99.7	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.4	99.7	GSM292791	51_1403.1K.R250L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.8	99.7	GSM171655	23_W.B.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
19.6	99.7	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.1	99.7	GSM292986	62_C223.1M.R9M2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	987	Gma.3702.1.S1_at	BU578108	-	-	6e-7	At3g54420	ATEP3	C.G.	S.X.	Please select
0.36	4e-50	198	GmaAffx.86650.1.S1_at	BI321218	-	-	2e-8	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.79548.1.A1_at	CD407461	-	-	7e-1	At5g57000	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Gma.13676.1.A1_at	CD411025	-	-	2e-4	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C247000004_at	PsAffx.C247000004	-	-	6e-2	At1g01910	anion-transporting ATPase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C20000117_at	PsAffx.C20000117	-	-	7e-1	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C103000025_at	PsAffx.C103000025	-	-	2e-1	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C10000119_at	PsAffx.C10000119	-	-	2e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.11801.1.S1_at	CB376337	-	-	1e+0	At1g28510	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	6e-5	48	Arabidopsis thaliana	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	HVSMEm0019G04r2_at	HVSMEm0019G04r2	-	-	4e+0	At4g19630	heat shock factor protein-related / heat shock transcription factor-related	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	Os04g0494100	AB096140.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	1e-1	At2g43590	chitinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	6e-15	81	Populus trichocarpa	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.56403.1.S1_at	CA652448	-	-	2e-1	At3g04730	IAA16	C.G.	S.X.	Please select
0.15	3e-10	63	Vitis vinifera	1613871_at	CF207387	hypothetical protein LOC100256098	-	8e-6	At3g54420	ATEP3	C.G.	S.X.	Please select
0.06	4e-1	34	Zea mays	Zm.12391.1.S1_at	CF349132	endochitinase PR4	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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