CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.89916.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 GmaAffx.89916.1.S1_s_at CF805641 - - 4e-3 At5g61830 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.60 80.7 GmaAffx.69409.2.S1_at BM092952 - - 2e-2 At1g08230 - S.X. H.G.
0.44 63.3 Gma.4470.1.S1_s_at AW156251 - - 2e+0 At5g41401 unknown protein S.X. H.G.
0.35 48.6 GmaAffx.66195.1.S1_at AI988572 - - 1e-12 At5g11950 protein homodimerization S.X. H.G.
0.31 42.2 GmaAffx.91496.1.S1_s_at CF807221 - - 4e+0 At3g17300 - S.X. H.G.
0.17 21.2 GmaAffx.93301.2.S1_s_at CF808497 2'-hydroxydihydrodaidzein reductase - 1e-11 At4g05050 UBQ11 (UBIQUITIN 11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.5 99.5 GSM293546 60_2021.2A.R275L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.6 99.4 GSM293527 43_2015.2A.R250L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.3 99.2 GSM293248 35_1155.1P.R097L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.7 99.1 GSM293925 72_2195.2E.R239L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1 99.0 GSM293577 9_3009.2A.R9A2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9 99.0 GSM293948 93_2235.2E.R249L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8 99.0 GSM293887 38_2229.2E.R022L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6 98.9 GSM293077 77_1077.1N.R046L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5 98.9 GSM293543 58_2017.2A.R245L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4 98.9 GSM293674 13_2121.2C.R003L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1082 GmaAffx.89916.1.S1_at CF805641 - - 4e-3 At5g61830 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 4e-1 36 GmaAffx.6095.1.A1_at BI470446 - - 5e-3 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.08 4e-1 36 GmaAffx.6095.1.S1_at BI470446 - - 5e-3 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 4e-1 36 Gma.12503.2.S1_at BG238502 - - 9e-1 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.01 2e+0 34 PsAffx.CL388Contig1_s_at PsAffx.CL388Contig1 - - 1e+0 At5g27170 unknown protein C.G. S.X.
0.00 2e+0 34 PsAffx.C198000023_at PsAffx.C198000023 - - 4e+0 At3g48710 - C.G. S.X.
0.01 2e+0 34 PsAffx.C137000036_at PsAffx.C137000036 - - 1e+0 At2g01300 unknown protein C.G. S.X.
0.03 2e+0 34 GmaAffx.19812.1.A1_at BU548926 - - 4e+0 At5g57560 TCH4 (Touch 4) C.G. S.X.
0.03 2e+0 34 GmaAffx.19812.1.S1_at BI316435 - - 4e+0 At5g57560 TCH4 (Touch 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 42 Arabidopsis thaliana At5g61830 836305 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HV12D18u_at HV12D18u - - 1e+0 At5g16880 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.02 2e+0 34 Oryza sativa OsAffx.20033.1.S1_at - - - 0 C.G. S.X.
0.25 3e-8 59 Populus trichocarpa PtpAffx.45819.1.S1_at CK093531 hypothetical protein - 3e-6 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.2641.3.S1_at BG907133 - - 2e-50 At5g53460 GLT1 C.G. S.X.
0.20 2e-8 57 Vitis vinifera 1616244_at CA810108 hypothetical protein LOC100258479 - 3e-7 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.09 5e-1 34 Zea mays Zm.12736.2.S1_a_at AI881252 - - 5e+0 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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