Gene omics information

Query gene ID	GmaAffx.89671.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	GmaAffx.89671.1.A1_at	CK605541	-	-	2e+0	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select
0.44	63.3	Gma.14267.1.S1_at	CA850808	-	-	3e+1	At5g42785	unknown protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.32146.1.A1_at	BQ273585	-	-	3e-35	Atcg00600	-	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.32277.1.S1_at	AI495819	-	-	7e-9	Atcg00070	-	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.4970.1.S1_at	BM085400	-	-	3e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.77768.1.S1_at	BI674549	-	-	4e-129	Atcg00340	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
299.1	100.0	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
202.3	100.0	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
183.5	100.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
143.2	100.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
111.9	100.0	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.9	100.0	GSM184826	Young trifoliate leaf, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
67.8	100.0	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.7	100.0	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
66.5	100.0	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
66.0	100.0	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	1291	GmaAffx.89671.1.S1_at	CK605541	-	-	2e+0	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.55	0	967	GmaAffx.1301.40.S1_at	AW733801	-	-	2e+0	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.28	2e-83	309	Gma.17054.1.S1_s_at	BI945763	-	-	1e+1	At2g01470	STL2P (SEC12P-LIKE 2 PROTEIN)	C.G.	S.X.	Please select
0.13	3e-42	173	GmaAffx.43343.3.S1_s_at	AI496624	2-hydroxyisoflavanone dehydratase	-	4e+0	At3g27503	SCRL19 (SCR-Like 19)	C.G.	S.X.	Please select
0.09	2e-19	97	GmaAffx.43343.1.A1_at	CD415653	-	-	3e-3	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.05	6e-13	75	GmaAffx.43343.2.S1_at	BI945998	-	-	2e+0	At4g27130	eukaryotic translation initiation factor SUI1, putative	C.G.	S.X.	Please select
0.05	6e-13	75	GmaAffx.43343.2.S1_s_at	BI945998	-	-	2e+0	At4g27130	eukaryotic translation initiation factor SUI1, putative	C.G.	S.X.	Please select
0.09	2e-10	67	GmaAffx.89596.1.A1_at	CK606128	-	-	7e+0	At3g15000	-	C.G.	S.X.	Please select
0.21	2e-10	67	GmaAffx.89596.1.S1_at	CK606128	-	-	7e+0	At3g15000	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g08000	819991	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	3e-105	381	Hordeum vulgare	HVSMEc0001D14f_x_at	HVSMEc0001D14f	-	-	2e+0	At1g13670	unknown protein	C.G.	S.X.	Please select
0.59	0	886	Oryza sativa	Os.28409.5.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	0	1152	Populus trichocarpa	PtpAffx.250004.1.S1_at	13936324-1	-	-	1e+0	At2g32785	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	1015	Triticum aestivum	TaAffx.128418.12.S1_at	BE213544	-	-	3e+0	At2g31680	AtRABA5d (Arabidopsis Rab GTPase homolog A5d)	C.G.	S.X.	Please select
0.67	6e-102	369	Vitis vinifera	1608581_at	CB341933	-	-	4e+0	At4g23970	unknown protein	C.G.	S.X.	Please select
0.66	0	696	Zea mays	ZmAffx.1135.2.A1_at	AW455736	-	-	2e-1	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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