Gene omics information

Query gene ID	GmaAffx.89508.1.A1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.88	93.4	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.86	93.0	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.82	91.9	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.82	91.9	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.80	91.5	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.77	90.3	Gma.2308.1.S1_s_at	AF022462.1	isoflavone synthase 2	-	6e-2	At1g67195	MIR414 (MICRORNA 414)	S.X.	H.G.	Please select
0.71	87.8	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	99.3	GSM292510	26_1317.1H.R200L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0	99.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.3	99.1	GSM293521	38_2003.2A.R270L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM293524	40_2027.2A.R196L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM292912	85_1467.1L.R284L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.5	98.9	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.3	98.9	GSM293535	50_3005.2A.R9A1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM292289	36_C081.1E.SLE2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	926	Gma.2887.1.S1_s_at	CD417784	-	-	1e-23	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.69	0	860	GmaAffx.93094.1.S1_s_at	CF805936	-	-	5e+0	At3g05810	unknown protein	C.G.	S.X.	Please select
0.41	4e-116	418	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.51	5e-97	355	Gma.2887.2.S1_x_at	BI701520	-	-	3e+0	At3g05810	unknown protein	C.G.	S.X.	Please select
0.16	2e-12	73	GmaAffx.90449.1.S1_at	CF806174	-	-	2e-14	At3g53260	PAL2	C.G.	S.X.	Please select
0.08	4e-5	50	GmaAffx.75675.1.A1_at	AW351172	-	-	6e-1	At5g11120	unknown protein	C.G.	S.X.	Please select
0.06	4e-5	50	GmaAffx.59470.1.S1_at	BI469872	-	-	5e-18	At3g53260	PAL2	C.G.	S.X.	Please select
0.02	9e-3	42	Gma.3170.1.S1_at	BE659244	-	-	5e-23	At3g18600	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select
0.04	6e-1	36	GmaAffx.35572.1.S1_at	BE804644	-	-	8e+0	At3g30391	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-2	40	Hordeum vulgare	Contig11145_at	Contig11145	-	-	1e-1	At3g21970	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.03	5e-5	50	Oryza sativa	Os02g0626400	BI807677	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	9e-40	165	Populus trichocarpa	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-1	38	Triticum aestivum	Ta.13262.2.S1_at	CA742855	-	-	4e-3	At5g43850	ARD4	C.G.	S.X.	Please select
0.21	4e-23	107	Vitis vinifera	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.708.1.A1_at	AW563057	phenylalanine ammonia-lyase	-	2e+0	At5g61680	pectinesterase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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