Gene omics information

Query gene ID	GmaAffx.89500.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	GmaAffx.89500.1.A1_at	CK605776	-	-	1e+1	At5g48860	unknown protein	S.X.	H.G.	Please select
0.37	51.7	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.32	43.7	HgAffx.8265.1.S1_at	CB380236	-	-	5e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	S.X.	H.G.	Please select
0.30	40.4	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	S.X.	H.G.	Please select
0.23	29.9	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.23	29.9	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	S.X.	H.G.	Please select
0.23	29.9	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	S.X.	H.G.	Please select
0.21	26.6	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.9	99.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.6	99.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.8	99.7	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.0	99.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.8	99.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.0	99.7	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.0	99.6	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM171694	32_V.L.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2960	GmaAffx.89500.1.S1_at	CK605776	-	-	1e+1	At5g48860	unknown protein	C.G.	S.X.	Please select
0.37	3e-35	151	GmaAffx.89596.1.A1_at	CK606128	-	-	7e+0	At3g15000	-	C.G.	S.X.	Please select
0.11	3e-35	151	GmaAffx.89596.1.S1_at	CK606128	-	-	7e+0	At3g15000	-	C.G.	S.X.	Please select
0.14	6e-33	143	PsAffx.psHB043xP12f_at	PsAffx.psHB043xP12f	-	-	7e-2	At1g67260	TCP1	C.G.	S.X.	Please select
0.07	8e-20	99	PsAffx.CL356Contig1_at	PsAffx.CL356Contig1	-	-	2e+0	At5g11070	unknown protein	C.G.	S.X.	Please select
0.06	1e-18	95	GmaAffx.90320.1.S1_s_at	CF806045	-	-	3e+0	At5g15190	unknown protein	C.G.	S.X.	Please select
0.05	1e-18	95	GmaAffx.88970.1.A1_at	CK605713	-	-	7e+0	At5g15190	unknown protein	C.G.	S.X.	Please select
0.14	1e-18	95	GmaAffx.88970.1.S1_at	CK605713	-	-	7e+0	At5g15190	unknown protein	C.G.	S.X.	Please select
0.11	1e-18	95	GmaAffx.88992.1.A1_at	CK606304	-	-	8e-86	Atmg00030	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	At5g48860	834944	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-9	63	Hordeum vulgare	ChlorContig11_x_at	ChlorContig11	-	-	1e+0	At1g19980	cytomatrix protein-related	C.G.	S.X.	Please select
0.17	1e-84	315	Oryza sativa	OsAffx.26317.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-15	85	Populus trichocarpa	PtpAffx.80394.1.A1_at	DN488457	-	-	7e+0	At5g18210	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	5e-33	143	Triticum aestivum	Ta.5175.2.S1_at	BJ278002	-	-	3e+1	At5g52660	myb family transcription factor	C.G.	S.X.	Please select
0.18	4e-21	101	Vitis vinifera	1620811_at	BQ792368	-	-	7e-11	At5g06043	unknown protein	C.G.	S.X.	Please select
0.10	9e-5	48	Zea mays	ZmAffx.1135.2.A1_at	AW455736	-	-	2e-1	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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