Gene omics information

Query gene ID	GmaAffx.89491.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.89491.1.A1_at	CK606189	-	-	1e+0	At2g25355	exonuclease-related	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.93546.1.S1_at	CF806160	-	-	4e-13	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.92911.1.S1_at	CF808636	Transcription factor TFIIB	-	7e-45	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.93597.1.S1_at	CF809322	-	-	5e+0	At4g37235	unknown protein	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.92292.1.S1_at	CF808017	-	-	6e-2	At3g19090	RNA-binding protein, putative	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.92207.1.S1_at	CF807924	-	-	6e-24	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.9	99.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.4	99.3	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.6	99.1	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.8	98.4	GSM292410	14_1254.1G.R161P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1132	GmaAffx.89491.1.S1_at	CK606189	-	-	1e+0	At2g25355	exonuclease-related	C.G.	S.X.	Please select
0.48	0	749	GmaAffx.80015.1.S1_at	BE607723	-	-	1e-2	At1g44770	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.89225.1.S1_s_at	CK606455	copper amino oxidase	-	3e-2	At4g12280	copper amine oxidase family protein	C.G.	S.X.	Please select
0.03	4e-1	36	Gma.8092.1.A1_at	AW102194	-	-	1e+0	At3g21350	RNA polymerase transcriptional regulation mediator-related	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.22484.1.A1_at	BU546399	-	-	5e+0	At5g38380	-	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.17832.1.S1_at	BG652873	-	-	2e-4	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.4815.2.S1_at	BI974625	-	-	5e-1	At5g64390	HEN4 (HUA ENHANCER 4)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.2183.1.S1_at	CD402949	-	-	3e-9	At3g04520	THA2 (Threonine Aldolase 2)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.16364.1.S1_at	BI970968	-	-	2e+0	At4g19570	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g25355	817074	exonuclease-related	F:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HY08I14u_s_at	HY08I14u	-	-	2e+0	At1g07680	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.10110.3.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.224725.1.S1_at	pmrna43538	hypothetical protein	-	1e-6	At4g23150	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.65130.1.S1_at	BJ259878	-	-	7e-2	At5g02470	DPA	C.G.	S.X.	Please select
0.13	2e-18	91	Vitis vinifera	1614453_at	BQ798141	hypothetical protein LOC100259029	-	2e+0	At5g18910	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.789.1.A1_at	AI759114	-	-	3e+0	At4g05010	F-box family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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