CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.89396.1.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.89396.1.S1_x_at CK605572 - - 4e-2 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative S.X. H.G.
0.91 98.6 GmaAffx.89607.1.A1_at CK605906 - - 2e+0 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) S.X. H.G.
0.91 98.6 GmaAffx.88950.1.S1_s_at CK605733 - - 4e-1 At3g63080 ATGPX5 (glutathione peroxidase 5) S.X. H.G.
0.83 92.5 GmaAffx.59747.1.A1_s_at BI970840 - - 3e+0 At5g34905 unknown protein S.X. H.G.
0.83 92.5 GmaAffx.47611.1.S1_s_at CA936417 - - 8e-1 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) S.X. H.G.
0.80 91.5 Gma.10231.1.A1_at CF920420 - - 1e+0 At4g22700 LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.3 100.0 GSM293568 80_2032.2A.R152P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
70.9 100.0 GSM294259 19_2390.2I.R033P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.7 99.8 GSM292626 54_1342.1I.R214P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.0 99.8 GSM294118 73_2326.2G.R093P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.1 99.8 GSM293256 42_1532.1P.R023P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.8 99.8 GSM293737 70_2126.2C.R103P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.7 99.8 GSM292984 60_1510.1M.R307P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.2 99.8 GSM293436 26_1624.1R.R298P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.8 99.8 GSM293400 83_1593.1Q.R302L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.9 99.7 GSM293008 14_1096.1N.R060P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 0 1560 GmaAffx.89396.1.A1_at CK605572 - - 4e-2 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.58 0 1120 GmaAffx.89396.2.A1_s_at CK605844 - - 2e-3 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.71 0 708 Gma.4952.1.A1_s_at BI970047 - - 2e-2 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.26 2e-26 121 GmaAffx.60194.1.S1_at BM526020 - - 6e-2 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.12 7e-20 99 Gma.17116.1.A1_at BE658505 - - 7e-1 At5g57530 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.11 9e-13 75 Gma.117.1.S1_at AB083025.1 syringolide-induced protein 19-1-5 - 2e-13 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.04 5e-5 50 GmaAffx.89045.1.A1_s_at CK605938 - - 4e-19 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.04 5e-5 50 Gma.16471.1.S1_at BQ298739 - - 8e-19 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.04 2e-4 48 Gma.4027.1.S1_at BQ629007 - - 3e-12 At4g30270 MERI5B (meristem-5) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 4e-2 40 Arabidopsis thaliana At4g28850 829006 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO - - - C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig5258_at Contig5258 - - 2e-10 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.05 3e-1 38 Oryza sativa Os04g0604900 AK059203.1 - Xyloglucan endotransglycosylase (Fragment) 2e-10 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.37 8e-35 149 Populus trichocarpa PtpAffx.72560.1.S1_at DN492113 hypothetical protein - 3e-2 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.17446.1.S1_at CA620928 - - 4e-1 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.07 4e-2 38 Vitis vinifera 1609790_at CF207994 hypothetical protein LOC100252173 - 1e-10 At3g23730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 1e+0 34 Zea mays ZmAffx.925.1.S1_at AI795348 - - 8e-1 At1g43171 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage