Gene omics information

Query gene ID	GmaAffx.89191.1.A1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.89191.1.A1_x_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	S.X.	H.G.	Please select
0.67	86.1	Gma.414.1.S1_x_at	BE658080	-	-	6e-28	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.89191.1.A1_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	S.X.	H.G.	Please select
0.61	81.8	Gma.4208.2.S1_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select
0.50	71.7	Gma.317.1.S1_s_at	CD416707	-	-	3e-49	At2g41840	40S ribosomal protein S2 (RPS2C)	S.X.	H.G.	Please select
0.36	50.8	Gma.4208.2.S1_x_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.5	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM292230	28_1045.1B.R025L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292852	30_1463.1L.R282L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.9	95.4	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.9	95.4	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.8	95.1	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.8	95.1	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	644	GmaAffx.89191.1.A1_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.90	0	644	GmaAffx.89191.1.S1_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.90	0	644	GmaAffx.89191.1.A1_s_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.90	0	644	GmaAffx.89191.1.S1_x_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.90	0	644	GmaAffx.89191.1.S1_s_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.34	1e-107	389	Gma.6732.2.S1_at	AW351239	-	-	6e+0	At5g49850	jacalin lectin family protein	C.G.	S.X.	Please select
0.69	2e-91	335	Gma.17774.1.S1_at	CA935572	-	-	3e-25	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.39	5e-89	327	GmaAffx.32575.3.S1_at	CA802910	-	-	6e-10	At3g59280	TXR1 (THAXTOMIN A RESISTANT 1)	C.G.	S.X.	Please select
0.39	5e-89	327	GmaAffx.32575.3.S1_x_at	CA802910	-	-	6e-10	At3g59280	TXR1 (THAXTOMIN A RESISTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-20	99	Arabidopsis thaliana	At3g08520	820000	60S ribosomal protein L41 (RPL41D)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	1e-25	115	Hordeum vulgare	Contig726_x_at	Contig726	-	-	2e-13	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please select
0.20	2e-30	133	Oryza sativa	Os.27731.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	9e-29	127	Populus trichocarpa	PtpAffx.18438.1.A1_x_at	CV250284	-	-	4e-21	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	1e-27	123	Triticum aestivum	Ta.27117.6.S1_x_at	BJ262049	-	-	1e-12	At3g08520	60S ribosomal protein L41 (RPL41D)	C.G.	S.X.	Please select
0.24	3e-28	123	Vitis vinifera	1620501_at	CA817454	-	-	6e-23	At3g56020	60S ribosomal protein L41 (RPL41G)	C.G.	S.X.	Please select
0.17	7e-33	139	Zea mays	Zm.2895.7.A1_at	BQ164476	hypothetical protein LOC100275739	-	5e-18	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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