Gene omics information

Query gene ID	GmaAffx.88721.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.88721.1.S1_s_at	CK606003	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.91235.1.S1_s_at	CF806960	-	-	8e-45	At4g31300	PBA1	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92455.1.S1_s_at	CF808180	-	-	5e-34	At5g42790	PAF1	S.X.	H.G.	Please select
0.67	86.1	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.91569.1.S1_s_at	CF807294	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	95.4	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.7	94.8	GSM293416	98_1565.1Q.R153U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293381	66_C087.1Q.V7Q3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.6	94.5	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	1084	Gma.5792.1.S1_at	BG649960	-	-	3e-25	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.38	4e-118	424	GmaAffx.90480.1.A1_at	CF806205	-	-	6e-9	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.48	3e-113	408	Gma.5090.1.S1_at	AW101893	-	-	4e-7	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.21532.1.A1_at	CK350726	-	-	8e-1	At3g42800	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.21532.1.S1_at	CK350726	-	-	8e-1	At3g42800	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.12964.1.S1_at	CB376330	-	-	1e+0	At3g46090	ZAT7	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C94000044_at	PsAffx.C94000044	-	-	8e-1	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.00	6e+0	32	PsAffx.C53000086_at	PsAffx.C53000086	-	-	4e+0	At4g14260	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C279000006_at	PsAffx.C279000006	-	-	5e-1	At3g63030	MBD4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	5e-12	71	Arabidopsis thaliana	At1g75990	843931	26S proteasome regulatory subunit S3, putative (RPN3)	F:enzyme regulator activity;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex, membrane;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	8e-34	143	Hordeum vulgare	Contig6657_at	Contig6657	-	-	3e-25	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.17	2e-19	97	Oryza sativa	Os08g0550100	AK058374.1	-	Proteasome component region PCI domain containingprotein	3e-28	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.56	5e-62	238	Populus trichocarpa	Ptp.4328.1.A1_at	BU811347	hypothetical protein	-	3e-30	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	3e-26	119	Triticum aestivum	Ta.23012.1.S1_at	AJ610851	-	-	7e-20	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.47	5e-68	256	Vitis vinifera	1613705_at	CF517167	hypothetical protein LOC100264130	-	4e-27	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.33	4e-29	127	Zea mays	Zm.701.1.A1_a_at	CA403934	26S proteasome non-ATPase regulatory subunit 3 /// 26S proteasome non-ATPase regulatory subunit 3	-	2e-8	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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