Gene omics information

Query gene ID	GmaAffx.88036.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.88036.1.A1_at	BU548882	-	-	7e-85	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.40	57.1	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	S.X.	H.G.	Please select
0.33	46.1	HgAffx.19033.4.A1_x_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	S.X.	H.G.	Please select
0.29	39.0	PsAffx.C79000062_at	PsAffx.C79000062	-	-	2e-2	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	S.X.	H.G.	Please select
0.16	19.7	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.2	99.7	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
16.5	99.6	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
16.2	99.6	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
16.2	99.6	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
12.5	99.5	GSM244895	37_CON.M3W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.4	99.5	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.3	99.5	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.3	99.5	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.0	99.4	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	989	GmaAffx.88036.1.S1_at	BM307903	-	-	7e-85	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.55	1e-78	293	GmaAffx.92634.1.A1_x_at	CF809148	-	-	3e-57	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.55	1e-78	293	GmaAffx.92634.1.A1_s_at	CF809148	-	-	3e-57	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.55	1e-78	293	GmaAffx.92634.1.A1_at	CF809148	-	-	3e-57	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.55	1e-78	293	GmaAffx.92634.1.S1_at	CF808359	-	-	3e-60	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.46	1e-71	270	Gma.2590.5.S1_at	CA935591	-	-	4e-60	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.42	3e-48	192	GmaAffx.77678.1.S1_at	BM108233	ubiquitin carrier protein 4	-	2e-42	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.30	2e-18	93	GmaAffx.15158.2.S1_at	BE801051	-	-	1e-12	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.18	1e-4	48	GmaAffx.15158.1.S1_at	BU547080	-	-	1e+0	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	7e-85	313	Arabidopsis thaliana	At5g41340	834136	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	2e-19	95	Hordeum vulgare	Contig10533_at	Contig10533	-	-	4e-20	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.17	7e-59	228	Oryza sativa	Os10g0447100	AK120481.1	-	Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitincarrier protein 5)	2e-34	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	2e-64	246	Populus trichocarpa	PtpAffx.49864.1.S1_at	CV280846	hypothetical protein	-	1e-81	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	2e-54	212	Triticum aestivum	Ta.23803.1.A1_at	BJ318318	-	-	9e-46	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.51	3e-69	260	Vitis vinifera	1618265_at	CF403167	hypothetical protein LOC100244806	-	8e-86	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.44	9e-24	109	Zea mays	Zm.14916.4.S1_a_at	BM078301	hypothetical protein LOC100193596 /// ubiquitin-conjugating enzyme E2-21 kDa 1	-	1e-20	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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