Gene omics information

Query gene ID GmaAffx.87908.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6080.7GmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.6382.9Gma.16750.2.S1_s_atBI700016--3e-10At5g40760G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6)S.X.H.G.
0.6080.7GmaAffx.70005.1.S1_s_atCA936335--3e-10At1g066202-oxoglutarate-dependent dioxygenase, putativeS.X.H.G.
0.5979.5Gma.10216.1.S1_a_atBI969369--3e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)S.X.H.G.
0.5678.2GmaAffx.75948.1.S1_atBF424136--6e-15At1g08470strictosidine synthase family proteinS.X.H.G.
0.5678.2Gma.2439.1.S1_atBI972053--1e-7At4g02860catalyticS.X.H.G.
0.5678.2Gma.16750.1.S1_atBE658232--6e-119At3g27300G6PD5 (glucose-6-phosphate dehydrogenase 5)S.X.H.G.
0.5374.2GmaAffx.90759.1.S1_atCF806484--6e-2At2g27510ATFD3 (ferredoxin 3)S.X.H.G.
0.5071.7Gma.2679.1.S1_s_atBI945807--2e+0At4g00070-S.X.H.G.
0.4766.6GmaAffx.89867.1.A1_s_atCK606556--4e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.799.5GSM2923337_C085.1E.SLE3U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.299.3GSM29232875_C081.1E.SLE2U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.599.1GSM29222317_C025.1B.SLB2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.299.0GSM29228936_C081.1E.SLE2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.199.0GSM29231058_C085.1E.SLE3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.098.5GSM29313649_1115.1O.R073U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.098.5GSM29236638_C105.1F.SLF3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.698.3GSM29309713_1105.1O.R066L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.598.3GSM29228128_1185.1E.R113L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.398.2GSM29230047_C077.1E.SLE1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Gma.2891.1.S1_atBI971321--3e-49At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.012e+034PsAffx.C96000023_atPsAffx.C96000023--1e+0At4g32710ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseC.G.S.X.
0.012e+034PsAffx.C96000021_atPsAffx.C96000021--2e-2At4g06634zinc finger (C2H2 type) family proteinC.G.S.X.
0.012e+034PsAffx.C58000031_atPsAffx.C58000031--7e-1At4g01380plastocyanin-like domain-containing proteinC.G.S.X.
0.012e+034PsAffx.C50000097_atPsAffx.C50000097--5e+0At4g27670HSP21 (HEAT SHOCK PROTEIN 21)C.G.S.X.
0.002e+034PsAffx.C18000093_atPsAffx.C18000093--1e+0At2g36050OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)C.G.S.X.
0.032e+034HgAffx.4455.1.S1_atCD748970--5e+0At2g44304unknown proteinC.G.S.X.
0.042e+034GmaAffx.11848.1.A1_atAW349896--3e+1At5g2029040S ribosomal protein S8 (RPS8A)C.G.S.X.
0.036e+032HgAffx.21417.1.S1_atBI748336--7e-1At2g34980SETH1C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.272e-23109Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.132e-342Hordeum vulgareContig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.154e-240Oryza sativaOs02g0254700AK065153.1-Spermidine synthase 2 (EC 2.5.1.16) (Putrescineaminopropyltransferase 2) (SPDSY 2)2e-7At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.121e-1377Populus trichocarpaPtp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.162e-550Triticum aestivumTa.9393.1.S1_a_atCA640600--4e-1At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.091e-961Vitis vinifera1609980_a_atCA818363spermine synthase-4e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.196e-1683Zea maysZm.4248.1.A1_atAY110118.1hypothetical protein LOC100279222-6e-7At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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