Gene omics information

Query gene ID	GmaAffx.87757.1.S1_at
Gene name	MYB transcription factor MYB139
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	73.1	GmaAffx.87757.1.S1_at	BI425898	MYB transcription factor MYB139	-	2e-2	At3g46130	MYB111 (MYB DOMAIN PROTEIN 111)	S.X.	H.G.	Please select
0.59	79.5	Gma.5330.2.S1_at	BM092298	-	-	7e-5	At1g62280	SLAH1 (SLAC1 HOMOLOGUE 1)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.43786.2.S1_at	BU080930	-	-	4e-12	At2g17820	ATHK1 (histidine kinase 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.5330.1.S1_at	AW705639	-	-	3e-5	At1g62280	SLAH1 (SLAC1 HOMOLOGUE 1)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.15471.3.S1_x_at	BE346777	MYB transcription factor MYB145	-	4e-9	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	S.X.	H.G.	Please select
0.43	60.6	Gma.6813.1.A1_at	AW308988	-	-	5e-3	At3g23430	PHO1 (phosphate 1)	S.X.	H.G.	Please select
0.42	59.3	Gma.9511.1.S1_at	CA850830	-	-	8e-2	At5g64816	unknown protein	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.85444.1.S1_at	BG405531	-	-	3e-1	At1g28630	unknown protein	S.X.	H.G.	Please select
0.23	29.9	Gma.6176.1.S1_at	BM522553	-	-	1e-1	At3g27200	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.14030.1.S1_at	BE021503	-	-	3e-2	At1g23120	major latex protein-related / MLP-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.6	99.5	GSM292533	47_1288.1H.R182P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2	99.4	GSM294038	88_2282.2F.R224P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.0	99.4	GSM292550	62_1291.1H.R185U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.3	99.2	GSM292800	5_1436.1K.R267P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM292536	4_1320.1H.R201P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.8	99.1	GSM292607	36_1357.1I.R224U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.8	99.1	GSM292294	40_1184.1E.R112P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.6	99.1	GSM294004	57_2279.2F.R015U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0	99.0	GSM292752	16_1442.1K.R270P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	4e-69	262	GmaAffx.87757.3.S1_at	BQ253870	MYB transcription factor MYB139	-	6e-21	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.34	4e-69	262	GmaAffx.87757.3.S1_x_at	BQ253870	MYB transcription factor MYB139	-	6e-21	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.15	3e-5	50	GmaAffx.15471.3.S1_x_at	BE346777	MYB transcription factor MYB145	-	4e-9	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.15	3e-5	50	GmaAffx.15471.3.S1_s_at	BE346777	MYB transcription factor MYB145	-	4e-9	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.12	3e-5	50	GmaAffx.15471.1.S1_at	BQ611747	-	-	1e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.03	7e-3	42	GmaAffx.76637.2.S1_at	AW666451	-	-	1e-3	At3g46900	COPT2	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.17473.1.S1_at	BG507797	-	-	4e-9	At2g40140	CZF1	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.13087.1.S1_at	CD402464	-	-	1e+0	At4g03320	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C36000080_at	PsAffx.C36000080	-	-	2e+0	At4g18280	glycine-rich cell wall protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-2	40	Arabidopsis thaliana	At3g46130	823756	MYB111 (MYB DOMAIN PROTEIN 111)	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	34	Hordeum vulgare	HS18N01u_x_at	HS18N01u	-	-	1e-2	At3g23010	AtRLP36 (Receptor Like Protein 36)	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.5722.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.220800.1.S1_x_at	pmrna37240	hypothetical protein	-	4e+0	At4g26940	galactosyltransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.4152.1.S1_at	BJ259886	-	-	4e-2	At4g22420	-	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1609021_at	CF517705	similar to MYB transcription factor MYB139	-	8e-2	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9441.1.A1_at	AY105453.1	hypothetical protein LOC100278105	-	1e+0	At2g33790	AGP30 (ARABINOGALACTAN PROTEIN30)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage