Gene omics information

Query gene ID	GmaAffx.87604.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.9	GmaAffx.87604.1.S1_at	AW596527	-	-	9e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.80600.1.S1_at	AW830775	-	-	1e-3	At4g08790	nitrilase, putative	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.93137.1.S1_at	CF808862	-	-	6e-15	At5g49970	ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)	S.X.	H.G.	Please select
0.42	59.3	Gma.6941.2.S1_a_at	BU763126	-	-	2e-4	At3g07950	rhomboid protein-related	S.X.	H.G.	Please select
0.35	48.6	Gma.4155.2.S1_s_at	BI468894	EREBP/AP2 transcription factor	-	1e-2	At1g53887	unknown protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.93138.1.S1_s_at	CF808863	-	-	2e-27	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.59630.1.S1_x_at	BI892854	-	-	2e-1	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.91636.1.S1_s_at	CF807361	-	-	3e-63	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	S.X.	H.G.	Please select
0.30	40.4	Gma.4037.2.S1_s_at	CA784461	-	-	1e-16	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	S.X.	H.G.	Please select
0.29	39.0	Gma.5720.2.S1_a_at	BG652626	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.2	99.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.0	97.2	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.4	96.4	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.1	95.8	GSM293461	49_C104.1R.SLR3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293300	82_C059.1P.SLP1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293311	92_C061.1P.SLP2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293292	75_1530.1P.R005P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-25	115	Gma.2302.2.S1_x_at	BU965409	Putative cysteine protease	-	4e-15	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.10	4e-25	115	Gma.2302.1.S1_a_at	AW307490	cysteine protease-like /// cysteine proteinase	-	1e-39	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.10	4e-25	115	Gma.2302.1.S1_at	AW307490	cysteine proteinase	-	1e-39	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.10	4e-25	115	Gma.2302.1.S1_x_at	AW307490	cysteine proteinase	-	1e-39	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.01	3e-4	46	PsAffx.C48000005_at	PsAffx.C48000005	-	-	3e-2	At2g25830	YebC-related	C.G.	S.X.	Please select
0.03	3e-4	46	PsAffx.C104000010_at	PsAffx.C104000010	-	-	8e-1	At1g48960	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.05	3e-4	46	GmaAffx.44482.1.S1_at	BE475065	-	-	8e-20	At5g42560	abscisic acid-responsive HVA22 family protein	C.G.	S.X.	Please select
0.02	2e-2	40	PsAffx.C79000001_at	PsAffx.C79000001	-	-	2e-1	At1g33055	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	40	PsAffx.C12000079_at	PsAffx.C12000079	-	-	2e+0	At3g01513	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-1	34	Arabidopsis thaliana	At5g60360	836158	AALP (Arabidopsis aleurain-like protease)	Encodes a senescence-associated thiol protease.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	46	Hordeum vulgare	HS09O21u_at	HS09O21u	-	-	1e+0	At3g55880	unknown protein	C.G.	S.X.	Please select
0.06	3e-8	59	Oryza sativa	Os05g0141100	AK107510.1	-	THH1	6e+0	At3g55880	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.56333.1.A1_at	CV268986	hypothetical protein	-	4e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-5	50	Triticum aestivum	TaAffx.8397.1.S1_at	CA626111	-	-	7e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.09	7e-5	46	Vitis vinifera	1607999_s_at	BQ797116	hypothetical protein LOC100244107	-	4e-64	At3g45310	cysteine proteinase, putative	C.G.	S.X.	Please select
0.04	1e-4	46	Zea mays	Zm.6015.1.A1_at	AI666198	-	-	1e+0	At5g24570	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage