CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.87561.1.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.87561.1.S1_x_at BQ473189 - - 4e-3 At1g26250 proline-rich extensin, putative S.X. H.G.
0.91 98.6 GmaAffx.34785.11.S1_x_at BG042061 - - 6e-3 At1g21310 ATEXT3 (EXTENSIN 3) S.X. H.G.
0.83 92.5 Gma.5584.7.S1_x_at AI988428 - - 6e-5 At1g21310 ATEXT3 (EXTENSIN 3) S.X. H.G.
0.83 92.5 GmaAffx.34785.11.S1_at BG042061 - - 6e-3 At1g21310 ATEXT3 (EXTENSIN 3) S.X. H.G.
0.80 91.5 GmaAffx.90800.1.S1_x_at CF806525 - - 2e-2 At5g06630 proline-rich extensin-like family protein S.X. H.G.
0.60 80.7 GmaAffx.90749.1.S1_x_at CF806474 - - 3e-4 At2g43150 proline-rich extensin-like family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
255.7 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.5 99.9 GSM292916 89_C203.1L.SLL1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.2 99.7 GSM292902 76_C215.1L.R9L3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.3 99.7 GSM292901 75_1457.1L.R279U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.8 99.7 GSM292903 77_C199.1L.V7L1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.6 99.5 GSM292899 73_1487.1L.R294L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.4 99.5 GSM292908 81_1454.1L.R277P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.4 99.5 GSM292910 83_1471.1L.R286L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.8 99.4 GSM292905 79_C211.1L.SLL3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2 99.4 GSM244881 33_VP9.I1W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 7e-132 470 GmaAffx.90874.1.S1_s_at CF806599 - - 2e-2 At5g35190 proline-rich extensin-like family protein C.G. S.X.
0.44 2e-82 305 GmaAffx.90800.1.S1_x_at CF806525 - - 2e-2 At5g06630 proline-rich extensin-like family protein C.G. S.X.
0.45 6e-80 297 GmaAffx.91420.1.S1_s_at CF807145 - - 4e-3 At4g13390 proline-rich extensin-like family protein C.G. S.X.
0.53 2e-79 295 GmaAffx.90749.1.S1_x_at CF806474 - - 3e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.70 2e-79 295 GmaAffx.46127.1.S1_x_at BM093461 - - 3e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.34 6e-52 204 Gma.4346.1.S1_s_at AW309773 - - 3e-2 At3g54590 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) C.G. S.X.
0.35 2e-36 153 Gma.15543.1.S1_s_at L22030.1 hydroxyproline-rich glycoprotein - 5e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.26 8e-33 141 GmaAffx.34785.5.S1_s_at BQ453262 - - 6e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.16 8e-33 141 Gma.5672.8.S1_at BI970927 - - 4e-2 At3g54590 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-3 42 Arabidopsis thaliana At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA - - - C.G. S.X.
0.06 3e-2 38 Hordeum vulgare Contig14167_at Contig14167 - - 2e-3 At3g14480 glycine/proline-rich protein C.G. S.X.
0.04 3e-2 40 Oryza sativa OsAffx.6191.1.S1_at - - - 0 C.G. S.X.
0.39 4e-10 65 Populus trichocarpa PtpAffx.200833.1.S1_x_at pmrna1624 hypothetical protein - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.79088.1.S1_at CA721813 - - 6e-1 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) C.G. S.X.
0.10 7e-2 36 Vitis vinifera 1615469_at CB974963 - - 1e-3 At4g13390 proline-rich extensin-like family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.16380.1.A1_at CK985558 hypothetical protein LOC100278221 - 5e+0 At4g24644 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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