CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.87526.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.87526.1.S1_at BM954581 - - 6e+0 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) S.X. H.G.
0.46 65.5 GmaAffx.59154.1.S1_at BG508624 - - 7e+0 At4g37685 unknown protein S.X. H.G.
0.46 65.5 GmaAffx.91355.1.S1_s_at CF807080 alternative oxidase 2b - 7e-5 At5g64210 AOX2 S.X. H.G.
0.44 63.3 GmaAffx.86361.1.S1_s_at BG508205 alternative oxidase 2b - 4e-9 At3g27620 AOX1C S.X. H.G.
0.44 63.3 Gma.11120.1.S1_at U87907.1 alternative oxidase 2b - 3e-6 At3g22370 AOX1A (ALTERNATIVE OXIDASE 1A) S.X. H.G.
0.40 57.1 GmaAffx.78968.2.S1_at BM188587 - - 9e-13 At5g39670 calcium-binding EF hand family protein S.X. H.G.
0.32 43.7 GmaAffx.91573.1.S1_at CF807298 - - 5e-9 At3g05200 ATL6 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.2 99.8 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.5 99.5 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.9 99.0 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.9 98.8 GSM293416 98_1565.1Q.R153U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5 98.7 GSM292412 16_1250.1G.R155P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM293313 94_1237.1P.R145U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM294238 87_2337.2H.R240L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM292422 25_1253.1G.R161U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294179 41_2347.2H.R145U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294297 49_2429.2I.R158L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-10 67 GmaAffx.70823.1.S1_at BQ743055 - - 8e-3 At4g15120 VQ motif-containing protein C.G. S.X.
0.03 1e-1 38 GmaAffx.19745.1.S1_at BU544576 - - 1e-16 At3g02130 RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2) C.G. S.X.
0.03 1e-1 38 GmaAffx.18093.1.S1_at BG508908 - - 3e-9 At5g24120 SIGE (SIGMA FACTOR E) C.G. S.X.
0.01 6e-1 36 PsAffx.C91000051_at PsAffx.C91000051 - - 3e+0 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
0.00 6e-1 36 PsAffx.C65000072_at PsAffx.C65000072 - - 6e-2 At4g08230 glycine-rich protein C.G. S.X.
0.01 6e-1 36 PsAffx.C279000004_at PsAffx.C279000004 - - 4e+0 At3g14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.02 6e-1 36 GmaAffx.85116.1.S1_at AW760957 - - 7e+0 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
0.03 6e-1 36 GmaAffx.74428.1.A1_at BU546235 - - 9e-7 At3g14320 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e-1 36 GmaAffx.62606.2.S1_at BU083624 - - 5e-6 At4g36970 remorin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At5g63470 836466 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO - - - C.G. S.X.
0.05 8e-4 44 Hordeum vulgare HVSMEb0007D15r2_at HVSMEb0007D15r2 - - 2e-1 At4g15120 VQ motif-containing protein C.G. S.X.
0.06 8e-7 56 Oryza sativa Os06g0666400 AK108002.1 - VQ domain containing protein 6e+0 At4g15120 VQ motif-containing protein C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.45481.1.S1_s_at CK107626 hypothetical protein - 2e-2 At5g67040 unknown protein C.G. S.X.
0.06 3e-8 59 Triticum aestivum TaAffx.115983.1.S1_at CA685242 - - 4e-1 At4g15120 VQ motif-containing protein C.G. S.X.
0.03 8e-6 50 Vitis vinifera 1612494_at CB969403 hypothetical protein LOC100263941 - 3e-3 At5g05990 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
0.04 7e-4 44 Zea mays Zm.16973.1.S1_at CD219246 VQ motif family protein - 1e-8 At3g22160 VQ motif-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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