Gene omics information

Query gene ID	GmaAffx.87379.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.87379.1.S1_at	BI699241	-	-	9e-51	At5g49160	MET1 (METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.72251.1.S1_at	BF070887	-	-	1e+0	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.459.1.S1_s_at	BE823057	-	-	8e-2	At5g17690	TFL2 (TERMINAL FLOWER 2)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.85846.1.S1_at	BU547392	-	-	2e-1	At5g46640	DNA-binding family protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.63772.1.S1_at	AW471580	-	-	4e-9	At5g17690	TFL2 (TERMINAL FLOWER 2)	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.46567.1.S1_at	AI440556	-	-	2e-17	At5g41880	POLA3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.6	99.9	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
42.3	99.9	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
35.1	99.9	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
34.8	99.9	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
31.7	99.9	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
30.1	99.8	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
30.0	99.8	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
28.9	99.8	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
28.4	99.8	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
24.2	99.8	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	GmaAffx.17494.1.S1_at	AW278865	-	-	2e-1	At3g48208	-	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.15428.1.S1_at	CA783271	-	-	6e-17	At2g36485	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.90879.1.S1_at	CF806604	-	-	4e-7	At2g02570	nucleic acid binding	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.68807.1.S1_at	BI974876	-	-	4e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C213000009_at	PsAffx.C213000009	-	-	4e-1	At3g10850	GLY2	C.G.	S.X.	Please select
0.03	7e+0	32	GmaAffx.92523.1.S1_at	CF808248	-	-	7e-8	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.04	7e+0	32	GmaAffx.27228.1.S1_at	BM095077	-	-	7e-29	At1g80350	ERH3 (ECTOPIC ROOT HAIR 3)	C.G.	S.X.	Please select
0.01	7e+0	32	GmaAffx.10709.2.S1_at	AI736092	-	-	6e-5	At4g18390	TCP family transcription factor, putative	C.G.	S.X.	Please select
0.02	7e+0	32	Gma.16004.1.S1_at	BU548336	-	-	1e-29	At5g67370	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	9e-51	200	Arabidopsis thaliana	At5g49160	834975	MET1 (METHYLTRANSFERASE 1)	Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	32	Hordeum vulgare	Contig16272_at	Contig16272	-	-	2e+0	At3g22030	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.16	1e-20	101	Oryza sativa	Os07g0182900	AK111461.1	-	Cytosine-5 DNA methyltransferase MET1 (Fragment)	1e-36	At5g49160	MET1 (METHYLTRANSFERASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	5e-84	311	Populus trichocarpa	PtpAffx.212088.1.S1_s_at	pmrna23715	DNA methyltransferase /// DNA methyltransferase	-	3e-49	At5g49160	MET1 (METHYLTRANSFERASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	9e-11	67	Triticum aestivum	Ta.9261.1.S1_at	BT009495.1	-	-	3e-19	At4g14140	DMT2 (DNA METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.27	1e-31	135	Vitis vinifera	1613077_at	CF214087	-	-	2e+0	Atmg00280	-	C.G.	S.X.	Please select
0.06	7e-22	103	Zea mays	Zm.16993.1.A1_at	AY093415.1	DNA methyl transferase1	-	5e-11	At4g08990	DNA (cytosine-5-)-methyltransferase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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