Gene omics information

Query gene ID	GmaAffx.86812.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.8	GmaAffx.86812.1.S1_at	BU763556	-	-	3e-8	At5g42520	ATBPC6	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.46100.1.S1_at	BM086686	-	-	8e-9	At3g02680	NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.74302.1.S1_at	AW203781	-	-	1e-81	At3g17205	UPL6 (UBIQUITIN PROTEIN LIGASE 6)	S.X.	H.G.	Please select
0.54	74.8	GmaAffx.55872.1.S1_at	CA800829	-	-	8e-1	At2g41120	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.85901.1.S1_at	BF069141	-	-	3e-35	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.88360.1.S1_at	BQ473502	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.29525.1.S1_at	CA953478	-	-	2e-8	At3g58560	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.87598.1.S1_at	BM524947	-	-	8e-1	At2g13125	unknown protein	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.78395.1.S1_at	AW831861	-	-	2e-5	At1g42470	patched family protein	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.46716.1.S1_at	BM178782	-	-	2e-11	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.3	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293133	46_C044.1O.SLO2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293604	34_2072.2B.R303P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	GmaAffx.766.1.S1_at	BE059172	-	-	6e+0	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	7e-1	36	Gma.13184.1.A1_at	CD398024	-	-	2e-33	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C81000066_at	PsAffx.C81000066	-	-	3e+0	At4g14746	-	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C81000066_s_at	PsAffx.C81000066	-	-	3e+0	At4g14746	-	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C338000008_at	PsAffx.C338000008	-	-	3e+0	At5g58540	protein kinase family protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C299000008_at	PsAffx.C299000008	-	-	1e+0	At4g24805	methyltransferase	C.G.	S.X.	Please select
0.03	3e+0	34	HgAffx.12572.1.S1_at	CB375410	-	-	1e+1	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	C.G.	S.X.	Please select
0.04	3e+0	34	GmaAffx.80506.1.S1_at	AI988322	-	-	3e-1	At5g37260	RVE2 (REVEILLE 2)	C.G.	S.X.	Please select
0.01	3e+0	34	Gma.9630.1.S1_at	BE657632	-	-	1e-20	At2g31350	GLX2-5 (GLYOXALASE 2-5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-8	59	Arabidopsis thaliana	At5g42520	834259	ATBPC6	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	32	Hordeum vulgare	Contig24237_at	Contig24237	-	-	1e+1	At5g58990	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	Os06g0130600	AK070616.1	-	GAGA binding-like domain containing protein	1e-5	At5g42520	ATBPC6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	4e-33	143	Populus trichocarpa	Ptp.6630.1.S1_at	BU833731	hypothetical protein	-	2e-5	At5g42520	ATBPC6	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	32	Triticum aestivum	Ta.3411.1.S1_at	BJ211352	-	-	7e+0	At5g05950	MEE60 (maternal effect embryo arrest 60)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1619239_at	CF605787	hypothetical protein LOC100267514	-	2e-1	At1g48940	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.920.1.A1_at	AI783286	-	-	7e-1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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