Gene omics information

Query gene ID	GmaAffx.86773.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.2	GmaAffx.86773.2.S1_at	BG839283	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.90764.1.S1_s_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.42	59.3	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.40	57.1	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.86773.1.S1_s_at	BQ576578	-	-	2e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.20	25.1	GmaAffx.92278.1.S1_s_at	CF808003	6-phosphogluconate dehydrogenase	-	4e-74	At3g02360	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.7	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
14.7	99.6	GSM171621	15_Z.L.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.4	99.5	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.1	99.5	GSM171716	7_Y.I.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.9	99.5	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.5	99.5	GSM244891	36_SLO.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.1	99.5	GSM171697	32_Z.B.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.9	99.4	GSM171616	14_Y.F.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.9	99.4	GSM171709	5_Z.F.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.6	99.3	GSM171630	18_Z.I.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	5e-148	523	GmaAffx.86773.1.S1_s_at	BQ576578	-	-	2e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C115000006_at	PsAffx.C115000006	-	-	8e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.psHB014xE17f_at	PsAffx.psHB014xE17f	-	-	5e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C87000046_at	PsAffx.C87000046	-	-	2e+0	At1g80960	F-box protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C233000020_at	PsAffx.C233000020	-	-	1e-1	At5g12300	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C20000056_at	PsAffx.C20000056	-	-	6e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C132000039_at	PsAffx.C132000039	-	-	5e+0	At4g38090	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C105000029_at	PsAffx.C105000029	-	-	5e-1	At3g58710	WRKY69	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.48755.1.A1_at	BU547292	-	-	2e+0	At5g48490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-9	61	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-7	56	Hordeum vulgare	Contig1800_x_at	Contig1800	-	-	3e-17	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.12	8e-18	91	Oryza sativa	Os04g0518400	AK067801.1	-	Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)	4e-22	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	4e-16	85	Populus trichocarpa	PtpAffx.128701.1.S1_s_at	CX185749	phenylalanine amonnia lyase	-	4e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	1e-15	83	Triticum aestivum	Ta.9220.3.S1_x_at	BJ278326	-	-	1e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1607307_at	CB970233	hypothetical protein LOC100258217	-	1e+0	At2g43720	unknown protein	C.G.	S.X.	Please select
0.08	3e-20	97	Zea mays	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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