Gene omics information

Query gene ID	GmaAffx.86773.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	78.8	GmaAffx.86773.1.S1_s_at	BQ576578	-	-	2e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.67	86.1	Gma.3881.2.S1_x_at	AW349366	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.67	86.1	Gma.3881.2.S1_at	AW349366	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.93522.1.S1_s_at	CF807271	-	-	2e-11	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.1445.3.S1_a_at	BE805686	-	-	9e-10	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	S.X.	H.G.	Please select
0.08	11.0	Gma.1288.2.S1_a_at	BE473596	-	-	2e-1	At2g22250	aminotransferase class I and II family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	99.1	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.4	98.9	GSM293250	37_C061.1P.SLP2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM294324	73_3151.2I.SLI2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.8	98.4	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM171697	32_Z.B.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM171711	6_W.B.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM292849	28_1443.1L.R271U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293248	35_1155.1P.R097L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM171616	14_Y.F.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	1e-147	523	GmaAffx.86773.2.S1_at	BG839283	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.13	1e-88	327	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C504000002_at	PsAffx.C504000002	-	-	2e-3	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C30000097_at	PsAffx.C30000097	-	-	6e-1	At3g61510	ACS1 (ACC SYNTHASE 1)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C16000111_at	PsAffx.C16000111	-	-	5e-2	At1g30760	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	36	PsAffx.C115000006_at	PsAffx.C115000006	-	-	8e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.03	6e-1	36	GmaAffx.56846.1.S1_at	BG508287	-	-	1e+1	Atmg01290	-	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C60000046_at	PsAffx.C60000046	-	-	2e+0	At4g01960	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	34	HgAffx.21178.1.S1_at	BI748575	-	-	2e-1	At3g06240	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-12	73	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-11	69	Hordeum vulgare	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.10	7e-20	99	Oryza sativa	Os04g0518400	AK067801.1	-	Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)	4e-22	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-15	83	Populus trichocarpa	PtpAffx.128701.1.S1_s_at	CX185749	phenylalanine amonnia lyase	-	4e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	5e-7	56	Triticum aestivum	TaAffx.119254.1.S1_at	BQ839170	-	-	1e-7	At3g53260	PAL2	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1621889_s_at	CB340269	-	-	1e-1	At1g69325	remorin family protein	C.G.	S.X.	Please select
0.05	8e-7	54	Zea mays	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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