Gene omics information

Query gene ID	GmaAffx.86728.3.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	GmaAffx.86728.3.S1_s_at	BG239619	-	-	7e-5	At1g32540	LOL1 (LSD ONE LIKE 1)	S.X.	H.G.	Please select
0.91	98.6	GmaAffx.86728.1.S1_at	BI967919	-	-	3e-7	At4g20380	zinc finger protein (LSD1)	S.X.	H.G.	Please select
0.80	91.5	Gma.1413.1.S1_a_at	AW734487	-	-	8e-37	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.91290.1.S1_s_at	CF806951	hypothetical LOC547651	-	2e-2	At5g25360	unknown protein	S.X.	H.G.	Please select
0.53	74.2	Gma.3852.1.S1_at	CD399104	-	-	8e-75	At5g27840	TOPP8	S.X.	H.G.	Please select
0.50	71.7	Gma.10215.1.S1_a_at	AY263347.1	protein kinase Pti1	-	1e-73	At3g59350	serine/threonine protein kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
317.2	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
248.6	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
227.7	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.1	95.8	GSM292355	24_C103.1F.R9F3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM292843	22_C214.1L.V7L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292653	7_C156.1I.V7I2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292551	63_1298.1H.R188P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM294025	76_3104.2F.V7F3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	3e-94	345	GmaAffx.86728.2.S1_at	BM526546	-	-	6e-2	At2g17240	unknown protein	C.G.	S.X.	Please select
0.40	2e-64	246	GmaAffx.3224.3.S1_at	BG511510	-	-	5e-2	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please select
0.06	2e-12	73	GmaAffx.86728.1.S1_at	BI967919	-	-	3e-7	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.90075.1.S1_at	CF805800	-	-	2e-5	At1g48770	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.90075.1.A1_s_at	CF805800	-	-	1e-3	At3g18295	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	38	GmaAffx.8280.1.S1_s_at	BE583885	-	-	2e-1	At3g28857	transcription regulator	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.93382.1.S1_at	CF809107	-	-	1e-6	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.86592.1.A1_at	BM094190	-	-	2e-1	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.86592.1.S1_at	BI273655	-	-	2e-1	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-5	48	Arabidopsis thaliana	At1g32540	840148	LOL1 (LSD ONE LIKE 1)	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-2	38	Hordeum vulgare	Contig10220_s_at	Contig10220	-	-	7e+0	At5g19480	unknown protein	C.G.	S.X.	Please select
0.06	4e-2	40	Oryza sativa	Os12g0611000	AK111837.1	-	Zinc finger protein LSD1	2e-4	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-8	59	Populus trichocarpa	PtpAffx.122847.1.S1_at	BU895628	hypothetical protein	-	4e-11	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e-2	38	Triticum aestivum	Ta.8226.1.S1_at	BE217050	18S subunit ribosomal protein	-	9e-3	At5g59790	unknown protein	C.G.	S.X.	Please select
0.22	2e-30	131	Vitis vinifera	1610475_at	CB979928	hypothetical protein LOC100242577	-	1e-7	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please select
0.05	2e+0	32	Zea mays	Zm.4177.1.A1_at	AY112520.1	hypothetical protein LOC100194364	-	2e-1	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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