Gene omics information

Query gene ID GmaAffx.86728.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.6GmaAffx.86728.1.S1_atBI967919--3e-7At4g20380zinc finger protein (LSD1)S.X.H.G.
0.8091.5GmaAffx.86728.3.S1_s_atBG239619--7e-5At1g32540LOL1 (LSD ONE LIKE 1)S.X.H.G.
0.8091.5Gma.1413.1.S1_a_atAW734487--8e-37At1g15880GOS11 (golgi snare 11)S.X.H.G.
0.6080.7GmaAffx.91290.1.S1_s_atCF806951hypothetical LOC547651-2e-2At5g25360unknown proteinS.X.H.G.
0.5374.2Gma.3852.1.S1_atCD399104--8e-75At5g27840TOPP8S.X.H.G.
0.5071.7Gma.10215.1.S1_a_atAY263347.1protein kinase Pti1-1e-73At3g59350serine/threonine protein kinase, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
310.2100.0GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
307.1100.0GSM308559Mature Soybean (Glycine max) pollen grains Replicate 2GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
267.2100.0GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.496.4GSM29404796_3095.2F.R9F1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29273075_C165.1J.R9J1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM29403787_3103.2F.V7F3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM29289065_C202.1L.R9L1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.393.3GSM29258919_C160.1I.V7I3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.393.3GSM29235928_C099.1F.V7F2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.393.3GSM29328972_1238.1P.R145P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.517e-108391Gma.233.1.S1_atBI946229--7e-2At4g20380zinc finger protein (LSD1)C.G.S.X.
0.362e-43176Gma.371.1.A1_atAW350138--7e-4At4g20380zinc finger protein (LSD1)C.G.S.X.
0.245e-1375GmaAffx.3224.2.S1_atBE024035--8e-1At1g04555unknown proteinC.G.S.X.
0.062e-1273GmaAffx.86728.3.S1_s_atBG239619--7e-5At1g32540LOL1 (LSD ONE LIKE 1)C.G.S.X.
0.072e-1273GmaAffx.3224.3.S1_atBG511510--5e-2At1g32540LOL1 (LSD ONE LIKE 1)C.G.S.X.
0.031e-138HgAffx.3187.1.A1_atCK349504--3e-1At1g30170unknown proteinC.G.S.X.
0.031e-138HgAffx.3187.1.S1_atCK349504--3e-1At1g30170unknown proteinC.G.S.X.
0.034e-136GmaAffx.85638.1.S1_atBF425777--4e-13At5g55000FIP2C.G.S.X.
0.032e+034HgAffx.10275.1.S1_atCB378809--3e-1At5g11640-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.203e-756Arabidopsis thalianaAt4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge---C.G.S.X.
0.051e-136Hordeum vulgareHVSMEf0005J23r2_x_atHVSMEf0005J23r2--2e+0At2g32710KRP4C.G.S.X.
0.072e-138Oryza sativaOs03g0639600AK111569.1-Zinc-finger protein Lsd14e-5At4g20380zinc finger protein (LSD1)C.G.S.X.
0.182e-1273Populus trichocarpaPtpAffx.122847.1.S1_atBU895628hypothetical protein-4e-11At4g20380zinc finger protein (LSD1)C.G.S.X.
0.035e+032Triticum aestivumTaAffx.29073.1.S1_atCA650980--1e+1At5g08190NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)C.G.S.X.
0.142e-1891Vitis vinifera1610475_atCB979928hypothetical protein LOC100242577-1e-7At4g20380zinc finger protein (LSD1)C.G.S.X.
0.084e-548Zea maysZm.4177.1.A1_atAY112520.1hypothetical protein LOC100194364-2e-1At4g20380zinc finger protein (LSD1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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