Gene omics information

Query gene ID	GmaAffx.86609.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.86609.1.S1_at	BM886908	-	-	9e-1	At4g28100	unknown protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.63042.1.S1_at	BM093448	-	-	8e-25	At5g19320	RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)	S.X.	H.G.	Please select
0.53	74.2	Gma.10687.1.S1_at	CD415391	-	-	4e-47	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.41781.1.A1_at	BU547221	-	-	6e-46	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please select
0.23	29.9	Gma.2784.1.S1_at	AW310361	-	-	2e-4	At3g01790	ribosomal protein L13 family protein	S.X.	H.G.	Please select
0.21	26.6	Gma.5905.3.S1_a_at	BM567825	-	-	7e-43	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.2	99.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
21.5	99.8	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
21.2	99.7	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
20.3	99.7	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
20.0	99.7	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
17.7	99.7	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
15.4	99.6	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
14.8	99.6	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
14.3	99.6	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
14.1	99.6	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	952	GmaAffx.86609.1.A1_at	BU548788	-	-	9e-1	At4g28100	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.2612.1.A1_at	BU544602	-	-	6e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.90633.1.S1_at	CF806358	-	-	2e-5	At2g34940	vacuolar sorting receptor, putative	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.90633.1.A1_s_at	CF806358	-	-	2e-2	At2g14720	VSR-2	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.69484.1.S1_at	CA801879	-	-	2e-2	At1g33980	Smg-4/UPF3 family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.62143.1.S1_at	BG352824	-	-	7e-30	At4g30190	AHA2	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.2300.2.S1_at	BM887591	-	-	1e-18	At3g52850	VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C64000059_s_at	PsAffx.C64000059	-	-	2e+0	At3g03660	WOX11 (WUSCHEL related homeobox 11)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C294000004_at	PsAffx.C294000004	-	-	2e+0	At5g37550	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	34	Arabidopsis thaliana	At4g28100	828926	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	Contig10231_at	Contig10231	-	-	2e-2	At5g12180	CPK17	C.G.	S.X.	Please select
Os03g0627450	0	0.03	Oryza sativa	Os03g0627400	9631.m04130	-	-	1e-1	At1g77640	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.18	6e-6	52	Populus trichocarpa	PtpAffx.211111.1.S1_at	pmrna21829	histone acetyltransferase	-	1e-4	At5g56740	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	TaAffx.50667.1.S1_at	CA739202	-	-	8e+0	At5g08350	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.07	7e-2	36	Vitis vinifera	1613732_at	CF415224	hypothetical protein LOC100250987	-	5e-1	At5g56740	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.14325.1.S1_at	AY104177.1	hypothetical protein LOC100279850	-	2e-1	At3g12550	XH/XS domain-containing protein / XS zinc finger domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage