Gene omics information

Query gene ID	GmaAffx.86511.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.86511.1.S1_at	BG789938	-	-	3e-16	At2g39550	PGGT-I	S.X.	H.G.	Please select
0.07	10.2	Gma.3563.2.S1_a_at	BG362899	-	-	3e-29	At3g55770	LIM domain-containing protein	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.71188.3.S1_at	BU577382	-	-	2e-7	At4g18230	-	S.X.	H.G.	Please select
0.05	8.0	Gma.2752.3.S1_at	AI973910	-	-	4e-37	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	S.X.	H.G.	Please select
0.05	8.0	Gma.706.2.S1_at	CA783193	-	-	1e-3	At4g10360	-	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.84960.1.S1_at	BE020664	-	-	1e-73	At1g10950	endomembrane protein 70, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	98.3	GSM244834	23_CON.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.5	97.7	GSM294407	64_2449.2J.R161L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM294416	72_2472.2J.R108P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294358	1_2468.2J.R216P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293012	18_1079.1N.R047L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM244818	1_SLO.M2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.0	97.2	GSM294392	50_2433.2J.R090U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294421	77_2442.2J.R198P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM244911	40_SLO.M2W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.9	97.1	GSM294404	61_2452.2J.R290P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-9	63	GmaAffx.6412.1.S1_at	AW349831	-	-	2e-2	At2g42460	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.9635.1.S1_s_at	BU762587	-	-	3e-76	At2g42490	copper amine oxidase, putative	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C82000028_at	PsAffx.C82000028	-	-	3e-1	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C244000010_at	PsAffx.C244000010	-	-	6e+0	At5g33390	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C11000110_at	PsAffx.C11000110	-	-	5e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.65289.1.S1_at	BM269812	-	-	1e-10	At4g15850	ATRH1	C.G.	S.X.	Please select
0.04	6e+0	32	GmaAffx.16900.1.S1_at	BE022916	-	-	2e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please select
0.02	6e+0	32	Gma.6686.1.S1_at	BU544116	-	-	1e-2	At5g55480	SVL1 (SHV3-LIKE 1)	C.G.	S.X.	Please select
0.03	6e+0	32	Gma.3299.1.S1_at	AW705982	-	-	8e-1	At4g04423	endo-1,3(4)-beta-glucanase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-16	85	Arabidopsis thaliana	At2g39550	818540	PGGT-I	encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HVSMEl0011L15f2_s_at	HVSMEl0011L15f2	-	-	4e-2	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.4636.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	4e-4	46	Populus trichocarpa	PtpAffx.219349.1.S1_at	pmrna35242	hypothetical protein	-	6e-10	At2g39550	PGGT-I	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	30	Triticum aestivum	TaAffx.83590.1.S1_at	CA655745	-	-	4e+0	At2g03505	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zea mays	Zm.2937.1.A1_at	AW091431	-	-	2e+0	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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