Gene omics information

Query gene ID	GmaAffx.86175.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	74.8	GmaAffx.86175.2.S1_at	BI471498	-	-	2e-2	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	S.X.	H.G.	Please select
0.82	91.9	GmaAffx.55342.1.S1_at	AW306993	-	-	5e-3	At1g65560	allyl alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.75	89.5	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.93265.1.S1_s_at	CF808990	aspartate aminotransferase glyoxysomal isozyme AAT1 precursor	-	2e-27	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.91821.1.S1_s_at	CF807546	-	-	7e-12	At1g80360	aminotransferase class I and II family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.77900.1.S1_s_at	BM139626	-	-	4e-37	At5g50850	MAB1 (MACCI-BOU)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.90396.1.S1_s_at	CF806121	-	-	4e-53	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.42	59.3	Gma.5649.3.S1_a_at	BM085101	protein disufide isomerase-like protein /// protein disulfide isomerase-like protein	-	7e-20	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.4	98.2	GSM294043	92_3107.2F.SLF3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293496	15_3013.2A.SLA3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294044	93_2261.2F.R205L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293922	6_3085.2E.SLE3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM244794	14_CON.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM294028	79_3099.2F.V7F2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM244806	17_CON.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM294026	77_3105.2F.R9F3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-29	129	GmaAffx.86175.1.S1_at	AW349132	-	-	1e+0	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.51	2e-22	107	GmaAffx.92410.1.S1_s_at	CF808078	-	-	3e-2	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.41	2e-22	107	Gma.1269.1.S1_at	AW309671	-	-	4e-2	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.45	2e-18	93	GmaAffx.81481.1.S1_at	BF598509	-	-	1e+0	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	C.G.	S.X.	Please select
0.40	2e-12	73	Gma.8351.2.S1_s_at	BM886530	-	-	1e-7	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.22	2e-12	73	Gma.8351.1.S1_s_at	AI443561	-	-	2e-10	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.05	3e-2	40	Gma.1445.3.S1_a_at	BE805686	-	-	9e-10	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.03	3e-2	40	Gma.1445.2.S1_at	BQ610936	-	-	1e-11	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.05	1e-1	38	GmaAffx.91344.1.S1_at	CF807069	-	-	4e+0	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-2	40	Arabidopsis thaliana	At1g09490	837474	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	38	Hordeum vulgare	Contig3928_s_at	Contig3928	-	-	1e-14	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.04	3e+0	34	Oryza sativa	Os10g0441466	9638.m02620	-	-	2e+0	At1g60040	AGL49 (AGAMOUS-LIKE 49)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-4	48	Populus trichocarpa	PtpAffx.107166.1.S1_s_at	CV257356	cinnamoyl CoA reductase-like protein	-	3e-13	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.50319.1.S1_at	CA742773	-	-	5e-1	At1g79210	20S proteasome alpha subunit B, putative	C.G.	S.X.	Please select
0.14	3e-8	57	Vitis vinifera	1622507_at	CB975105	-	-	6e-20	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.02	9e-3	40	Zea mays	Zm.6870.1.A1_at	BM379176	dihydroflavonol-4-reductase	-	2e-11	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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