CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.85973.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 GmaAffx.85973.1.S1_at BF424215 - - 3e+0 At5g40630 ubiquitin family protein S.X. H.G.
0.80 91.5 GmaAffx.88368.1.S1_at CA801738 - - 2e-8 At3g50670 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) S.X. H.G.
0.67 86.1 GmaAffx.75287.1.S1_at BM086047 - - 2e-1 At4g01000 ubiquitin family protein S.X. H.G.
0.61 81.8 Gma.4305.3.S1_a_at BG044173 - - 5e-8 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) S.X. H.G.
0.50 71.7 GmaAffx.92146.1.S1_s_at CF807871 - - 2e-42 At2g29580 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.33 46.1 GmaAffx.42058.1.S1_at AW507617 - - 3e-13 At1g61040 VIP5 (vernalization independence 5) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.7 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM294397 55_2458.2J.R073P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM294489 54_3198.2K.R9K3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM292959 38_C232.1M.R9M3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM294688 58_2604.2M.R127P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM292969 47_C222.1M.R9M1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM294310 60_3154.2I.R9I2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293586 18_2092.2B.R298P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM294654 27_3234.2M.R9M3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-45 182 Gma.1752.3.S1_a_at AW569205 - - 5e-2 At4g04860 DER2.2 (DERLIN-2.2) C.G. S.X.
0.15 4e-31 135 Gma.1752.2.S1_at BI785614 - - 2e-16 At5g61020 ECT3 C.G. S.X.
0.18 1e-25 117 GmaAffx.81267.1.S1_at BU965377 - - 2e-1 At5g50870 UBC27 (ubiquitin-conjugating enzyme 27) C.G. S.X.
0.01 1e+0 34 PsAffx.C54000009_at PsAffx.C54000009 - - 3e-1 At5g02220 unknown protein C.G. S.X.
0.01 5e+0 32 PsAffx.C47000048_at PsAffx.C47000048 - - 4e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.01 5e+0 32 PsAffx.C19000134_at PsAffx.C19000134 - - 4e+0 At5g62260 DNA binding C.G. S.X.
0.03 5e+0 32 GmaAffx.82676.1.S1_at BM271388 - - 1e+0 At2g40435 - C.G. S.X.
0.03 5e+0 32 GmaAffx.7270.1.S1_at BE659100 - - 4e+0 At2g36180 calmodulin-related protein, putative C.G. S.X.
0.02 5e+0 32 GmaAffx.64117.1.S1_at BG239723 - - 1e-5 At1g67970 AT-HSFA8 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At5g40630 834062 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig3644_s_at Contig3644 - - 5e-9 At5g55850 NOI C.G. S.X.
0.04 2e+0 34 Oryza sativa Os02g0609000 AK062391.1 - Conserved hypothetical protein 1e+1 At5g09310 unknown protein C.G. S.X.
0.09 1e+0 34 Populus trichocarpa PtpAffx.152465.1.S1_s_at CX171963 hypothetical protein - 6e+0 At5g43980 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.50671.1.S1_at CA737102 - - 9e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1622467_at CF513078 - - 4e+0 At1g79160 unknown protein C.G. S.X.
0.02 1e+0 32 Zea mays Zm.13811.1.A1_at AY104705.1 - - 2e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage