Gene omics information

Query gene ID	GmaAffx.85901.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	GmaAffx.85901.1.S1_at	BF069141	-	-	3e-35	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.78395.1.S1_at	AW831861	-	-	2e-5	At1g42470	patched family protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.90987.1.S1_at	CF806712	-	-	1e+0	At5g64750	ABR1 (ABA REPRESSOR1)	S.X.	H.G.	Please select
0.46	65.5	Gma.8062.2.S1_a_at	BG652071	-	-	4e-14	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.56355.1.S1_s_at	BU926126	-	-	6e-2	At2g01310	unknown protein	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.448.1.S1_at	AW568523	-	-	2e-73	At3g44600	CYP71 (CYCLOPHILIN71)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.86122.1.S1_at	BG155892	-	-	6e-19	At3g51310	VPS35C (VPS35 HOMOLOG C)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.22932.1.S1_at	BI316684	-	-	1e-28	At2g01060	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.7	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293260	46_1242.1P.R148P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293346	34_1550.1Q.R078P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293155	66_1142.1O.R090P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293277	61_1162.1P.R101P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293154	65_1106.1O.R066P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293580	12_2096.2B.R046P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293663	88_2050.2B.R124P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-26	121	GmaAffx.34400.1.S1_at	BE821202	-	-	7e+0	At5g15360	unknown protein	C.G.	S.X.	Please select
0.04	7e-3	42	GmaAffx.55336.1.S1_at	BI470865	-	-	2e-2	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C91000051_at	PsAffx.C91000051	-	-	3e+0	At5g16820	HSF3 (HEAT SHOCK FACTOR 3)	C.G.	S.X.	Please select
0.03	4e-1	36	HgAffx.13210.1.S1_at	CD748683	-	-	3e-4	At1g75340	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C95000062_at	PsAffx.C95000062	-	-	6e-1	At5g60340	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C57000045_at	PsAffx.C57000045	-	-	3e-4	At2g20310	RIN13 (RPM1 INTERACTING PROTEIN 13)	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C14000038_at	PsAffx.C14000038	-	-	1e-1	At1g49270	protein kinase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C137000027_at	PsAffx.C137000027	-	-	4e-4	At2g02070	AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5)	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.C133000016_at	PsAffx.C133000016	-	-	1e+0	At5g11280	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-35	149	Arabidopsis thaliana	At1g25540	839141	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	4e-5	48	Hordeum vulgare	Contig13671_at	Contig13671	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os07g0244100	9635.m01389	-	-	1e+0	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	9e-92	337	Populus trichocarpa	PtpAffx.208002.1.S1_x_at	pmrna15881	hypothetical protein	-	2e-59	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.70544.1.S1_s_at	BQ802109	-	-	5e-9	At3g05570	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1607080_at	CF210665	-	-	1e+0	At1g18780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.966.1.S1_at	AI677247	-	-	8e-1	At5g47830	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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