Gene omics information

Query gene ID	GmaAffx.85311.2.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.85311.2.S1_s_at	BG155686	-	-	4e+0	At5g24570	unknown protein	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.90733.1.A1_s_at	CF808300	UDP-glucose dehydrogenase	-	2e-28	At5g39320	UDP-glucose 6-dehydrogenase, putative	S.X.	H.G.	Please select
0.23	29.9	GmaAffx.67775.2.S1_s_at	BE802463	-	-	4e-27	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select
0.21	26.6	Gma.7433.1.S1_at	BM093327	-	-	5e-32	At1g64650	-	S.X.	H.G.	Please select
0.20	25.1	GmaAffx.91894.1.S1_s_at	CF807619	-	-	2e-37	At1g76030	vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit	S.X.	H.G.	Please select
0.19	23.7	Gma.3563.2.S1_a_at	BG362899	-	-	3e-29	At3g55770	LIM domain-containing protein	S.X.	H.G.	Please select
0.19	23.7	Gma.2190.1.S1_at	CD390492	-	-	1e-125	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.87206.1.S1_at	BG042041	-	-	7e-11	At3g06550	-	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.48660.1.S1_at	BE475515	-	-	2e-7	At3g29810	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.30833.1.S1_at	AW509222	-	-	1e-5	At5g55640	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	99.6	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
11.6	99.4	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.3	99.4	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.6	99.1	GSM292823	80_1408.1K.R253P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.6	98.7	GSM244779	10_SLO.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.1	98.5	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.0	98.5	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.7	98.4	GSM244932	8_V71.M2W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.2	98.1	GSM293374	5_1574.1Q.R160P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	6e-120	430	GmaAffx.85311.1.S1_at	BI971353	-	-	4e-2	At5g42860	unknown protein	C.G.	S.X.	Please select
0.47	3e-26	119	GmaAffx.48363.1.S1_at	CD414885	-	-	2e+0	At5g42860	unknown protein	C.G.	S.X.	Please select
0.12	4e-7	56	GmaAffx.90159.1.S1_at	CF805884	-	-	5e+0	At4g22650	-	C.G.	S.X.	Please select
0.06	6e-3	42	GmaAffx.86246.1.S1_at	BG238647	-	-	4e+0	At4g35170	-	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C73000016_at	PsAffx.C73000016	-	-	5e-2	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	36	HgAffx.9012.1.S1_at	CB379489	-	-	5e+0	At5g48350	nucleic acid binding	C.G.	S.X.	Please select
0.09	3e-1	36	Gma.13006.1.S1_s_at	CD395352	-	-	4e+0	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C42000051_at	PsAffx.C42000051	-	-	2e+0	At1g76070	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.6777.1.S1_at	CB825434	-	-	1e+0	At3g08762	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g24570	832528	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	EBed02_SQ002_J19_at	EBed02_SQ002_J19	-	-	7e-1	At1g58460	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os04g0689500	AK060983.1	-	Conserved hypothetical protein	7e-1	At5g60615	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-1	36	Populus trichocarpa	PtpAffx.207265.1.S1_at	pmrna14412	hypothetical protein	-	5e-1	At2g18010	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.73792.1.S1_at	BJ271372	-	-	1e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.11	5e-6	50	Vitis vinifera	1613399_at	CF208828	hypothetical protein LOC100254049	-	3e-3	At5g42860	unknown protein	C.G.	S.X.	Please select
0.06	7e-3	40	Zea mays	Zm.7579.1.A1_at	CO520294	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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