Gene omics information

Query gene ID	GmaAffx.85304.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.9	GmaAffx.85304.1.S1_at	BG155103	-	-	5e+0	At5g38290	peptidyl-tRNA hydrolase family protein	S.X.	H.G.	Please select
0.73	88.9	Gma.13099.1.S1_at	CD417080	-	-	8e-12	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please select
0.72	88.1	Gma.3588.1.S1_at	CD408984	-	-	2e-52	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please select
0.72	88.1	Gma.7200.1.S1_at	CD409833	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	S.X.	H.G.	Please select
0.69	86.8	Gma.13001.2.S1_a_at	BU578274	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	S.X.	H.G.	Please select
0.68	86.4	Gma.7012.1.S1_a_at	CD392604	-	-	7e-3	At3g29070	protein transmembrane transporter	S.X.	H.G.	Please select
0.61	81.8	Gma.10122.1.A1_at	CD405211	-	-	3e-8	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.61	81.8	Gma.8261.1.A1_s_at	AW348445	-	-	1e-1	At5g14910	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.61	81.8	Gma.7148.1.A1_at	CD393367	-	-	9e-17	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	S.X.	H.G.	Please select
0.60	80.7	Gma.1963.1.S1_s_at	BG041460	-	-	8e-23	At1g50900	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
174.3	100.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
110.8	100.0	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
109.5	100.0	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
97.6	100.0	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
92.0	100.0	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
82.7	100.0	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
75.0	100.0	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
74.8	100.0	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
72.4	100.0	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
71.3	100.0	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-71	270	Gma.14547.1.S1_at	CD414845	-	-	2e-2	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	C.G.	S.X.	Please select
0.47	4e-69	262	Gma.13859.1.S1_at	CD408020	-	-	5e-3	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	C.G.	S.X.	Please select
0.04	7e-3	42	Gma.3310.1.S1_at	BQ299050	-	-	8e-11	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	C.G.	S.X.	Please select
0.02	4e-1	36	GmaAffx.73019.1.S1_at	BU545254	-	-	4e-27	At5g11860	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C2000077_at	PsAffx.C2000077	-	-	2e-1	At5g50080	DNA binding / transcription factor	C.G.	S.X.	Please select
0.04	2e+0	34	HgAffx.14569.1.S1_at	CB299571	-	-	2e+0	At4g08039	-	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.18087.1.S1_at	BI967917	-	-	7e-46	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.1829.1.A1_a_at	CD414022	-	-	3e+0	At2g31040	ATP synthase protein I -related	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.16112.3.S1_at	BG791108	-	-	2e-26	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g38290	833811	peptidyl-tRNA hydrolase family protein	F:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	Contig2516_at	Contig2516	-	-	7e-16	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os06g0704500	AK105531.1	-	Leucine-rich repeat, plant specific containingprotein	3e+0	At4g33970	protein binding / structural constituent of cell wall	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	3e-54	212	Populus trichocarpa	Ptp.6633.1.S1_at	CV265141	-	-	7e-12	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.7932.1.S1_at	CA643566	-	-	1e+1	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.29	9e-39	159	Vitis vinifera	1616222_at	CF414707	-	-	1e-18	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	ZmAffx.675.1.S1_at	AI734494	-	-	3e+0	At4g24700	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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