CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.85171.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 91.5 GmaAffx.85171.1.S1_at BU091668 - - 7e-6 At5g10710 protein binding S.X. H.G.
0.67 86.1 Gma.6104.2.S1_at BI320811 - - 3e-20 At5g63260 zinc finger (CCCH-type) family protein S.X. H.G.
0.63 82.9 Gma.18012.1.S1_at BM568411 - - 8e-28 At4g36690 ATU2AF65A S.X. H.G.
0.60 80.7 GmaAffx.89525.1.S1_s_at CK606517 - - 3e-26 At2g39840 TOPP4 S.X. H.G.
0.53 74.2 GmaAffx.22932.1.S1_at BI316684 - - 1e-28 At2g01060 myb family transcription factor S.X. H.G.
0.53 74.2 Gma.6104.1.S1_x_at BU760692 - - 8e-3 At3g48440 zinc finger (CCCH-type) family protein S.X. H.G.
0.43 60.6 Gma.1995.1.S1_at AW164508 - - 4e-23 At3g12760 - S.X. H.G.
0.38 53.3 Gma.6104.2.S1_a_at BI320811 - - 3e-20 At5g63260 zinc finger (CCCH-type) family protein S.X. H.G.
0.31 42.2 Gma.5720.1.S1_s_at AW348669 - - 4e-5 At1g51200 zinc finger (AN1-like) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.8 95.1 GSM170928 V2 Control, biological rep3 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
2.0 91.7 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.0 91.7 GSM293982 37_2266.2F.R123P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.0 91.7 GSM293305 87_1214.1P.R131P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.9 90.9 GSM293409 91_C083.1Q.V7Q2U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.9 90.9 GSM209573 mock_0hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
1.9 90.9 GSM293540 55_2016.2A.R250P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8 90.1 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
1.8 90.1 GSM293543 58_2017.2A.R245L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.8 90.1 GSM293572 84_3012.2A.V7A2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-14 81 Gma.6687.1.S1_at BE820609 - - 8e-2 At5g10710 protein binding C.G. S.X.
0.03 5e-1 36 Gma.6999.1.S1_x_at AF529303.1 PR10-like protein - 8e-2 At3g62840 - C.G. S.X.
0.03 5e-1 36 Gma.6999.1.S1_s_at AF529303.1 PR10-like protein /// hypothetical LOC547915 - 8e-2 At3g62840 - C.G. S.X.
0.02 5e-1 36 Gma.1626.1.S1_a_at BU543989 - - 2e-25 At4g01400 - C.G. S.X.
0.02 5e-1 36 Gma.1626.1.S1_at BU543989 - - 2e-25 At4g01400 - C.G. S.X.
0.01 2e+0 34 PsAffx.C53000080_at PsAffx.C53000080 - - 1e+0 At5g11750 ribosomal protein L19 family protein C.G. S.X.
0.01 2e+0 34 PsAffx.C37000088_at PsAffx.C37000088 - - 3e+0 At4g07408 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C13000125_at PsAffx.C13000125 - - 2e+0 At2g30115 - C.G. S.X.
0.03 2e+0 34 GmaAffx.27632.2.S1_at BI424855 - - 1e+0 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 7e-6 52 Arabidopsis thaliana At5g10710 830936 protein binding F:protein binding;P:chromosome segregation, cell division;C:chromosome, centromeric region, nucleus;PM - - - C.G. S.X.
0.11 2e-13 75 Hordeum vulgare Contig20582_at Contig20582 - - 2e+0 At5g38020 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
0.19 1e-21 105 Oryza sativa Os04g0284100 AK100448.1 - Conserved hypothetical protein 7e-1 At2g37630 AS1 (ASYMMETRIC LEAVES 1) C.G. S.X.
0.47 8e-65 248 Populus trichocarpa Ptp.8023.1.S1_at BU814949 hypothetical protein - 3e-18 At5g10710 protein binding C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.80663.1.S1_at CA694223 - - 4e+0 At1g76560 CP12-3 C.G. S.X.
0.29 1e-60 232 Vitis vinifera 1617908_at CF373287 hypothetical protein LOC100259361 - 8e-9 At5g10710 protein binding C.G. S.X.
0.02 3e+0 32 Zea mays Zm.19174.1.A1_at CO533891 NAD(P)H-dependent oxidoreductase - 5e+0 At4g00920 COP1-interacting protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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