Gene omics information

Query gene ID	GmaAffx.85114.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	GmaAffx.85114.1.S1_s_at	AW760844	-	-	3e+0	At4g26466	LRE (LORELEI)	S.X.	H.G.	Please select
0.58	78.8	Gma.16750.1.S1_at	BE658232	-	-	6e-119	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	S.X.	H.G.	Please select
0.50	71.7	Gma.10216.1.S1_a_at	BI969369	-	-	3e-8	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.91723.1.S1_at	CF805997	-	-	3e-86	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.86175.1.S1_at	AW349132	-	-	1e+0	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.75948.1.S1_at	BF424136	-	-	6e-15	At1g08470	strictosidine synthase family protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.91826.1.S1_s_at	CF808285	-	-	4e-53	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.89867.1.A1_s_at	CK606556	-	-	4e-3	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	S.X.	H.G.	Please select
0.33	46.1	Gma.2679.1.S1_s_at	BI945807	-	-	2e+0	At4g00070	-	S.X.	H.G.	Please select
0.27	35.7	Gma.3924.1.S1_at	BI497844	-	-	1e-7	At3g43740	leucine-rich repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.2	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293241	29_1545.1P.R068L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292166	20-C013.1A.SLA3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292457	57_C117.1G.SLG2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293685	23_2129.2C.R207L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292835	15_1467.1L.R284U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294037	87_3103.2F.V7F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293679	18_3047.2C.V7C2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293452	40_C097.1R.V7R2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292889	64_1477.1L.R289U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	7e-172	603	GmaAffx.89795.1.S1_s_at	CK606628	-	-	5e+0	At4g26466	LRE (LORELEI)	C.G.	S.X.	Please select
0.40	9e-88	323	GmaAffx.93487.1.S1_x_at	CF809212	-	-	4e+0	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select
0.40	9e-88	323	GmaAffx.93487.1.S1_at	CF809212	-	-	4e+0	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select
0.40	9e-88	323	GmaAffx.93487.1.S1_s_at	CF809212	-	-	4e+0	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	C.G.	S.X.	Please select
0.05	1e+0	34	GmaAffx.93611.1.S1_at	CF809336	-	-	1e+0	At2g03110	RNA binding / nucleic acid binding	C.G.	S.X.	Please select
0.05	1e+0	34	GmaAffx.93611.1.S1_s_at	CF809336	-	-	1e+0	At2g03110	RNA binding / nucleic acid binding	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C83000043_at	PsAffx.C83000043	-	-	6e+0	At1g60000	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C53000002_at	PsAffx.C53000002	-	-	4e+0	At5g23130	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C152000018_at	PsAffx.C152000018	-	-	4e-1	At5g16240	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g26466	6240393	LRE (LORELEI)	Encodes a membrane localized (putative GPI-anchored) protein involved in fertilization. Loss of function mutations display defects in fertilization-around 25% of embryo sacs abort.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	30	Hordeum vulgare	HW04H17u_s_at	HW04H17u	-	-	2e-1	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.03	7e+0	32	Oryza sativa	OsAffx.7250.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-5	48	Populus trichocarpa	PtpAffx.216610.1.S1_s_at	pmrna31513	hypothetical protein	-	9e-1	At2g20360	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.32119.1.S1_at	CA600549	-	-	9e-2	At1g14010	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select
0.05	7e-2	36	Vitis vinifera	1610704_at	CA809376	hypothetical protein LOC100246525	-	3e-2	At2g18120	SRS4 (SHI-RELATED SEQUENCE 4)	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.815.1.A1_at	AI770430	Hypothetical protein LOC100191164	-	3e+0	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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