CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.84879.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.84879.1.S1_at AI735921 - - 6e-15 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) S.X. H.G.
0.80 91.5 Gma.13356.1.S1_at AB046874.1 allergen Gly m Bd 28K - 2e-1 At5g62130 Per1-like protein-related S.X. H.G.
0.80 91.5 Gma.8432.1.S1_at U59425.1 precursor (AA -24 to 403) - 3e+0 At4g28990 RNA-binding protein-related S.X. H.G.
0.77 90.3 Gma.16820.1.S1_s_at X05652.1 glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin - 5e-3 At5g19260 unknown protein S.X. H.G.
0.73 88.9 Gma.953.1.S1_at BE823997 - - 6e+0 At5g40700 unknown protein S.X. H.G.
0.67 86.1 Gma.1880.2.S1_at AW704809 - - 3e+0 At5g25890 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
364.6 100.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
269.4 100.0 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
266.7 100.0 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
262.4 100.0 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
248.2 100.0 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
242.0 100.0 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
236.8 100.0 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
234.3 100.0 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
225.8 100.0 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
222.6 100.0 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 2e-37 157 GmaAffx.79829.1.S1_at AI941230 - - 8e-17 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.08 1e-16 87 Gma.918.1.S1_at BE823317 - - 4e-6 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) C.G. S.X.
0.04 1e-4 48 Gma.5998.1.A1_at BI968591 - - 1e-48 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) C.G. S.X.
0.04 1e-4 48 Gma.14992.1.S1_at BE823350 - - 4e-51 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) C.G. S.X.
0.03 1e-1 38 Gma.11324.2.S1_a_at CD397701 - - 1e-14 At3g16240 DELTA-TIP C.G. S.X.
0.03 1e-1 38 Gma.11324.2.S1_at CD397701 - - 1e-14 At3g16240 DELTA-TIP C.G. S.X.
0.02 4e-1 36 GmaAffx.91504.1.S1_at CF809102 - - 2e-6 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.02 4e-1 36 GmaAffx.91504.1.A1_s_at CF807229 - - 2e-6 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.01 2e+0 34 PsAffx.C80000037_at PsAffx.C80000037 - - 4e-1 At2g22460 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-15 81 Arabidopsis thaliana At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete - - - C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig23290_at Contig23290 - - 2e-1 At5g10400 histone H3 C.G. S.X.
0.03 2e+0 34 Oryza sativa Os12g0231200 9640.m01249 - - 1e+0 At3g51100 unknown protein C.G. S.X.
0.21 1e-10 67 Populus trichocarpa PtpAffx.217238.1.S1_s_at pmrna32424 aquaporin, MIP family, TIP subfamily - 9e-12 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
0.03 5e-3 42 Triticum aestivum TaAffx.13222.1.A1_at BJ254457 - - 1e+0 At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1614260_at BQ798900 hypothetical protein LOC100244318 - 2e+0 At4g16780 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.12825.1.S1_at CA402807 - - 4e-2 At2g36830 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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