Gene omics information

Query gene ID	GmaAffx.84873.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.84873.1.S1_at	AW472165	-	-	3e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select
0.69	86.8	Gma.3702.1.S1_at	BU578108	-	-	6e-7	At3g54420	ATEP3	S.X.	H.G.	Please select
0.68	86.4	GmaAffx.89972.1.S1_s_at	CF805697	-	-	6e-5	At2g43590	chitinase, putative	S.X.	H.G.	Please select
0.64	83.4	GmaAffx.90538.1.A1_s_at	CF806263	-	-	8e-2	At2g24810	pathogenesis-related thaumatin family protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.494.1.S1_at	AI938330	-	-	1e+0	At5g41420	unknown protein	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.42847.1.S1_s_at	BU578388	-	-	5e-12	At2g14580	ATPRB1	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.46214.4.S1_at	AI460836	-	-	4e+0	At5g35405	-	S.X.	H.G.	Please select
0.51	72.3	GmaAffx.69694.1.S1_at	BQ785570	-	-	3e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	S.X.	H.G.	Please select
0.51	72.3	GmaAffx.18924.1.S1_at	BU546215	-	-	1e-5	At2g18950	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.49	68.3	GmaAffx.31985.1.S1_at	BI320384	-	-	3e+0	At3g20557	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.6	99.9	GSM294098	55_2291.2G.R251L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
30.5	99.8	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.3	99.8	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.8	99.8	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.9	99.8	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.4	99.8	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.7	99.7	GSM294225	75_2365.2H.R095L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.0	99.7	GSM293248	35_1155.1P.R097L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.2	99.7	GSM293010	16_C019.1N.R9N1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.8	99.7	GSM294044	93_2261.2F.R205L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	PsAffx.C38000109_at	PsAffx.C38000109	-	-	5e-2	At1g22620	ATSAC1 (suppressor of actin 1)	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.91053.1.S1_at	CF806778	-	-	5e-28	At5g10980	histone H3	C.G.	S.X.	Please select
0.04	5e-1	36	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.2338.1.S1_s_at	CD409383	-	-	4e-55	At5g10980	histone H3	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C228000020_at	PsAffx.C228000020	-	-	5e+0	At5g39230	transcription initiation factor-related	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.C20000088_at	PsAffx.C20000088	-	-	3e+0	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.92851.1.S1_s_at	CF808576	-	-	1e-1	At1g59960	aldo/keto reductase, putative	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.92033.1.S1_at	CF807745	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.92033.1.S1_x_at	CF807745	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-11	69	Arabidopsis thaliana	At3g49680	824130	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	34	Hordeum vulgare	HVSMEl0011N19r2_x_at	HVSMEl0011N19r2	-	-	5e-1	At5g51900	cytochrome P450 family	C.G.	S.X.	Please select
0.04	1e-8	61	Oryza sativa	Os03g0106400	AK108687.1	-	Branched-chain-amino-acid aminotransferase 5,chloroplast precursor (EC 2.6.1.42) (Atbcat-5)	6e-14	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	9e-6	52	Populus trichocarpa	PtpAffx.41318.1.S1_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.109805.1.S1_at	CA668604	-	-	4e+0	At3g03370	-	C.G.	S.X.	Please select
0.07	7e-3	40	Vitis vinifera	1622060_at	BM436271	-	-	3e-32	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.04	3e-6	52	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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