CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.84862.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 GmaAffx.84862.1.S1_at AI965964 - - 1e-29 At5g61240 protein binding S.X. H.G.
0.48 67.7 GmaAffx.93138.1.S1_s_at CF808863 - - 2e-27 At2g32080 PUR ALPHA-1 S.X. H.G.
0.40 57.1 GmaAffx.22627.1.S1_at BG352722 - - 4e-2 At1g18520 TET11 (TETRASPANIN11) S.X. H.G.
0.37 51.7 Gma.5244.3.S1_a_at BM893397 - - 1e-32 At2g32080 PUR ALPHA-1 S.X. H.G.
0.36 50.8 GmaAffx.37006.2.S1_at AI494839 - - 2e-11 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) S.X. H.G.
0.33 46.1 GmaAffx.91636.1.S1_s_at CF807361 - - 3e-63 At1g57870 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) S.X. H.G.
0.25 32.6 GmaAffx.1729.2.S1_at BG726769 - - 2e-42 At4g35410 clathrin adaptor complex small chain family protein S.X. H.G.
0.16 19.7 GmaAffx.90062.1.S1_s_at CF805787 - - 1e-108 At1g53750 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 97.2 GSM293333 22_1549.1Q.R078L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM293605 35_2091.2B.R298U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2 96.0 GSM293584 16_2089.2B.R181U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293377 62_1573.1Q.R160L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293772 18_2164.2D.R027P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293150 61_C045.1O.V7O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM293593 24_2082.2B.R035P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM293595 26_2077.2B.R246U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293849 88_3063.2D.V7D2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-67 256 Gma.2440.1.S1_at AW309684 - - 8e-15 At5g61240 protein binding C.G. S.X.
0.02 6e-1 36 PsAffx.C97000005_at PsAffx.C97000005 - - 3e+0 At2g26120 glycine-rich protein C.G. S.X.
0.02 6e-1 36 PsAffx.C66000025_at PsAffx.C66000025 - - 3e+0 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.03 6e-1 36 GmaAffx.22286.1.S1_at BU551302 - - 4e-6 At5g65300 unknown protein C.G. S.X.
0.02 2e+0 34 PsAffx.psZS013xL16f_at PsAffx.psZS013xL16f - - 1e+0 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.01 2e+0 34 PsAffx.C11000110_at PsAffx.C11000110 - - 5e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
0.01 2e+0 34 PsAffx.C1000118_at PsAffx.C1000118 - - 2e+0 At1g49450 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 2e+0 34 GmaAffx.92640.1.S1_at CF808365 - - 2e-27 At5g66530 aldose 1-epimerase family protein C.G. S.X.
0.02 2e+0 34 GmaAffx.79907.1.S1_at BF324687 - - 2e-15 At2g44770 phagocytosis and cell motility protein ELMO1-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-29 131 Arabidopsis thaliana At5g61240 836245 protein binding F:protein binding;P:signal transduction;C:Golgi apparatus;PMBOFA - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig5270_x_at Contig5270 - - 2e+0 At4g14430 IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10) C.G. S.X.
0.07 2e-7 57 Oryza sativa Os03g0211900 AK059280.1 - Leucine-rich repeat, typical subtype containingprotein 2e-38 At5g61240 protein binding C.G. S.X.
0.29 6e-35 149 Populus trichocarpa PtpAffx.144134.1.S1_a_at CV241139 hypothetical protein - 5e-17 At5g61240 protein binding C.G. S.X.
0.08 7e-3 42 Triticum aestivum TaAffx.24357.1.S1_at BJ310144 - - 1e-20 At5g61240 protein binding C.G. S.X.
0.05 9e-6 50 Vitis vinifera 1616773_at CB342378 hypothetical protein LOC100243945 - 1e-15 At5g61240 protein binding C.G. S.X.
0.11 5e-8 57 Zea mays Zm.1316.1.A1_at AY106193.1 hypothetical protein LOC100194245 - 1e-24 At5g61240 protein binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage