Gene omics information

Query gene ID	GmaAffx.84643.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	92.8	GmaAffx.84643.1.S1_at	BU545213	-	-	1e-19	At5g61580	PFK4 (PHOSPHOFRUCTOKINASE 4)	S.X.	H.G.	Please select
0.54	74.8	Gma.16230.1.S1_at	CD404236	-	-	1e-1	At5g23330	riboflavin biosynthesis protein-related	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.62870.1.S1_at	BE346662	-	-	2e-51	At3g10350	anion-transporting ATPase family protein	S.X.	H.G.	Please select
0.51	72.3	Gma.7276.1.S1_at	CD394605	-	-	2e-31	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.1301.26.S1_at	CD397615	-	-	4e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	S.X.	H.G.	Please select
0.44	63.3	Gma.12870.1.A1_at	CD414345	-	-	5e+0	At5g33421	unknown protein	S.X.	H.G.	Please select
0.43	60.6	Gma.1205.2.S1_at	BU081316	-	-	5e-32	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	S.X.	H.G.	Please select
0.39	54.5	Gma.1781.1.A1_a_at	AI960136	-	-	1e+0	At5g03905	hesB-like domain-containing protein	S.X.	H.G.	Please select
0.39	54.5	Gma.1205.2.S1_a_at	BU081316	-	-	5e-32	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	S.X.	H.G.	Please select
0.39	54.5	Gma.12855.1.S1_at	BG045651	-	-	9e-20	At5g14460	pseudouridine synthase/ transporter	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.0	99.9	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
44.6	99.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
35.0	99.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
33.7	99.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
28.8	99.8	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
26.3	99.8	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
25.8	99.8	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
25.6	99.8	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
25.5	99.8	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
25.2	99.8	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-11	69	GmaAffx.45872.1.S1_at	BM095149	-	-	2e-23	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	C.G.	S.X.	Please select
0.08	9e-6	52	GmaAffx.87922.1.S1_at	BU084547	-	-	2e-8	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	C.G.	S.X.	Please select
0.10	2e-3	44	GmaAffx.52122.1.S1_at	CA852761	-	-	8e-11	At5g61580	PFK4 (PHOSPHOFRUCTOKINASE 4)	C.G.	S.X.	Please select
0.06	2e-3	44	GmaAffx.52122.2.S1_at	CA784199	-	-	3e-16	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C232000009_s_at	PsAffx.C232000009	-	-	3e-2	At5g37550	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C13000128_at	PsAffx.C13000128	-	-	2e+0	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C1029000001_at	PsAffx.C1029000001	-	-	9e-1	At4g05000	VPS28-2	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.4530.1.S1_at	BI317212	-	-	9e-1	At2g22941	-	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.2512.1.A1_at	AW119768	-	-	1e+0	At1g28610	GDSL-motif lipase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-19	97	Arabidopsis thaliana	At5g61580	836279	PFK4 (PHOSPHOFRUCTOKINASE 4)	F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	40	Hordeum vulgare	Contig6490_at	Contig6490	-	-	2e-35	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select
0.15	3e-3	44	Oryza sativa	Os06g0151900	AK058759.1	-	Hypothetical protein	1e-4	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-16	87	Populus trichocarpa	PtpAffx.5423.2.A1_a_at	CV242446	hypothetical protein	-	1e-13	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	7e-6	52	Triticum aestivum	Ta.5521.1.A1_at	CD933384	-	-	2e-9	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	C.G.	S.X.	Please select
0.17	1e-13	75	Vitis vinifera	1612295_at	CF512417	-	-	7e-32	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select
0.09	4e-8	57	Zea mays	Zm.6508.1.A1_at	CF637880	6-phosphofructokinase	-	7e-13	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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