CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.84623.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 60.6 GmaAffx.84623.1.S1_at BQ298236 - - 1e-12 At1g05500 NTMC2T2.1 S.X. H.G.
0.67 86.1 GmaAffx.56355.1.S1_s_at BU926126 - - 6e-2 At2g01310 unknown protein S.X. H.G.
0.61 81.8 GmaAffx.93491.1.S1_s_at CF809216 - - 3e-1 At4g38280 unknown protein S.X. H.G.
0.40 57.1 GmaAffx.90987.1.S1_at CF806712 - - 1e+0 At5g64750 ABR1 (ABA REPRESSOR1) S.X. H.G.
0.33 46.1 Gma.10781.1.S1_a_at AW101008 - - 7e-29 At2g38630 - S.X. H.G.
0.33 46.1 Gma.8062.2.S1_a_at BG652071 - - 4e-14 At2g21630 transport protein, putative S.X. H.G.
0.24 30.9 GmaAffx.92769.1.S1_s_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 97.0 GSM293604 34_2072.2B.R303P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293133 46_C044.1O.SLO2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293526 42_2022.2A.R275P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293403 86_1592.1Q.R301P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293639 66_2084.2B.R288P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293500 19_2008.2A.R283P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM292173 29-C006.1A.SLA1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM293503 21_2007.2A.R283U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM293386 70_C080.1Q.R9Q2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 Gma.5747.1.S1_at BG510757 - - 4e-40 At1g48410 AGO1 (ARGONAUTE 1) C.G. S.X.
0.03 4e-1 36 Gma.11860.2.S1_at BE802446 - - 3e-17 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.02 2e+0 34 GmaAffx.9037.2.S1_at BE657653 - - 2e-3 At2g37410 ATTIM17-2 C.G. S.X.
0.04 2e+0 34 GmaAffx.83771.1.S1_at CA785924 - - 4e+0 At5g11160 APT5 (Adenine phosphoribosyltransferase 5) C.G. S.X.
0.02 2e+0 34 GmaAffx.51444.1.S1_at BM178639 - - 1e-32 At5g60020 LAC17 (laccase 17) C.G. S.X.
0.04 2e+0 34 GmaAffx.49992.1.S1_at BE611333 - - 8e-1 At5g58070 TIL (TEMPERATURE-INDUCED LIPOCALIN) C.G. S.X.
0.03 2e+0 34 GmaAffx.1098.1.S1_at BE657948 - - 1e+0 At2g04830 F-box family protein C.G. S.X.
0.02 2e+0 34 Gma.3992.1.S1_at CD406087 phosphomannomutase - 1e-48 At2g45790 PMM (PHOSPHOMANNOMUTASE) C.G. S.X.
0.03 2e+0 34 Gma.2017.2.S1_at BM143435 - - 4e-6 At4g30240 protein binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-12 73 Arabidopsis thaliana At1g05500 837052 NTMC2T2.1 F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO - - - C.G. S.X.
0.09 2e-16 85 Hordeum vulgare Contig6110_at Contig6110 - - 2e-8 At1g05500 NTMC2T2.1 C.G. S.X.
0.08 2e-10 67 Oryza sativa Os08g0300200 AK069706.1 - C2 domain containing protein 7e-5 At1g05500 NTMC2T2.1 C.G. S.X.
0.40 2e-33 143 Populus trichocarpa Ptp.1404.1.S1_at CV259304 plant synaptotagmin - 7e-28 At1g05500 NTMC2T2.1 C.G. S.X.
0.08 3e-16 85 Triticum aestivum Ta.14313.1.S1_x_at CK163888 - - 1e-6 At1g05500 NTMC2T2.1 C.G. S.X.
0.05 8e-2 36 Vitis vinifera 1612670_at CB343506 - - 3e-4 At3g14415 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.09 5e-16 83 Zea mays Zm.6631.1.A1_at AY108443.1 hypothetical protein LOC100191632 - 1e-2 At5g11100 SYTD C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage