Gene omics information

Query gene ID	GmaAffx.84404.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.84404.1.S1_at	BG238613	-	-	4e-6	At4g07670	protease-associated (PA) domain-containing protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.48644.1.S1_at	AW620338	-	-	9e-13	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.06	9.0	Gma.6514.2.S1_a_at	BI786323	-	-	2e-7	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.67417.1.S1_at	BE191495	-	-	4e-1	At3g14610	CYP72A7	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.84199.1.S1_at	AW201276	-	-	3e-22	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please select
0.00	1.4	GmaAffx.80018.1.S1_at	BF071726	-	-	1e-22	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.5	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.5	99.5	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
11.7	99.4	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.6	99.2	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.4	99.2	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.3	99.1	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.9	99.0	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
7.9	99.0	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.8	99.0	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-15	83	GmaAffx.48644.1.S1_at	AW620338	-	-	9e-13	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	2e-2	40	GmaAffx.85352.1.S1_at	CD410050	-	-	6e+0	At4g05632	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	38	GmaAffx.3706.1.S1_at	BE821261	-	-	4e-10	At1g48320	thioesterase family protein	C.G.	S.X.	Please select
0.03	8e-2	38	Gma.16381.1.S1_at	CD405024	-	-	2e-9	At2g35120	glycine cleavage system H protein, mitochondrial, putative	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.35303.1.S1_at	BE440840	-	-	1e-3	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	C.G.	S.X.	Please select
0.04	3e-1	36	Gma.6546.1.S1_at	CD392353	-	-	9e-23	At3g56020	60S ribosomal protein L41 (RPL41G)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.84359.1.S1_at	BM955089	-	-	7e-9	At3g55460	SCL30	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.28214.3.S1_at	AW164194	-	-	3e+0	At5g04850	VPS60.2	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.24390.1.A1_at	BU547189	-	-	2e-1	At1g29480	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-6	52	Arabidopsis thaliana	At4g07670	826236	protease-associated (PA) domain-containing protein	F:peptidase activity;P:proteolysis;C:mitochondrion;MOFBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	32	Hordeum vulgare	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please select
0.06	2e-6	54	Oryza sativa	Os.36961.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.34440.1.S1_at	CK097838	hypothetical protein	-	6e-16	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	9e-1	34	Triticum aestivum	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.06	5e-9	59	Vitis vinifera	1616292_at	CF209464	-	-	2e+0	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	ZmAffx.1418.1.S1_at	40794996-93	-	-	9e-78	Atmg00960	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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