CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.83672.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.83672.1.S1_at BU926827 - - 2e-51 At2g26000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.83 92.5 Gma.15087.2.S1_at CA800369 - - 1e-94 At4g28860 ckl4 (Casein Kinase I-like 4) S.X. H.G.
0.67 86.1 GmaAffx.78631.1.S1_at BQ613160 - - 5e-31 At1g12360 KEU (keule) S.X. H.G.
0.67 86.1 GmaAffx.67700.1.S1_at CB063625 - - 9e-1 At5g13620 unknown protein S.X. H.G.
0.48 67.7 GmaAffx.90745.1.S1_s_at CF806470 - - 4e+0 At5g42235 Expressed protein S.X. H.G.
0.36 50.8 Gma.15087.1.S1_at BI968833 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.8 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2 98.6 GSM292959 38_C232.1M.R9M3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM293718 53_2144.2C.R109P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM292917 8_C216.1L.R9L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM293865 18_2200.2E.R004P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4 98.2 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM294197 4_3138.2H.R9H2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 HgAffx.18471.1.S1_at CD749105 - - 5e-4 At3g22110 PAC1 C.G. S.X.
0.03 3e-1 36 Gma.7380.1.S1_at BU547312 - - 3e-14 At1g01040 DCL1 (DICER-LIKE 1) C.G. S.X.
0.01 1e+0 34 PsAffx.C94000021_at PsAffx.C94000021 - - 2e+0 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
0.03 1e+0 34 GmaAffx.91220.1.S1_s_at CF806007 - - 4e-87 At3g11940 ATRPS5A (RIBOSOMAL PROTEIN 5A) C.G. S.X.
0.04 1e+0 34 GmaAffx.88655.1.A1_at CD412099 - - 6e-1 At2g14000 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.80588.1.A1_at BE660726 - - 3e-1 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.03 1e+0 34 GmaAffx.80588.1.S1_at AW781916 - - 3e-1 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.02 1e+0 34 GmaAffx.7074.1.S1_at CD413571 - - 1e-8 At3g58530 F-box family protein-related C.G. S.X.
0.04 1e+0 34 GmaAffx.69146.1.S1_at BE020450 - - 2e-2 At2g26000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 2e-51 202 Arabidopsis thaliana At2g26000 817141 zinc finger (C3HC4-type RING finger) family protein F:protein binding, catalytic activity, zinc ion binding;P:unknown;C:chloroplast;MPOFB - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig2521_s_at Contig2521 - - 4e-21 At1g07770 RPS15A (ribosomal protein s15a) C.G. S.X.
0.17 1e-7 57 Oryza sativa Os.17743.1.S1_at - - - 0 C.G. S.X.
0.49 1e-46 186 Populus trichocarpa PtpAffx.161661.1.S1_s_at BU827309 hypothetical protein - 2e-30 At2g26000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.30536.1.S1_at CA624370 - - 2e+1 At4g08097 unknown protein C.G. S.X.
0.05 3e-1 34 Vitis vinifera 1608554_at CB971773 - - 4e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) C.G. S.X.
0.04 6e+0 30 Zea mays Zm.12473.1.S1_at CB329856 - - 3e+0 At3g30768 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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