Gene omics information

Query gene ID	GmaAffx.83384.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.83384.1.S1_at	BG508000	-	-	4e-10	At5g18860	inosine-uridine preferring nucleoside hydrolase family protein	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.49224.1.S1_at	BE608990	-	-	3e-1	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.60	80.7	Gma.6888.1.S1_at	BM178801	-	-	1e-3	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.14734.1.A1_at	BQ079911	-	-	7e-9	At1g02475	-	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.23295.1.S1_at	BI968028	-	-	3e-1	At5g52960	unknown protein	S.X.	H.G.	Please select
0.41	58.1	Gma.1205.2.S1_a_at	BU081316	-	-	5e-32	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	S.X.	H.G.	Please select
0.39	54.5	Gma.613.1.S1_a_at	BI424045	-	-	2e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.39	54.5	Gma.1650.2.S1_at	AW830667	-	-	8e-28	At2g20890	PSB29	S.X.	H.G.	Please select
0.37	51.7	GmaAffx.76841.1.S1_at	BM270378	-	-	5e-3	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.2197.1.S1_at	CD414544	-	-	1e+0	At5g10680	calmodulin-binding protein-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
81.9	100.0	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.4	100.0	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
61.2	99.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
57.0	99.9	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
54.9	99.9	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
53.8	99.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
52.8	99.9	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
51.2	99.9	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
42.2	99.9	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
35.3	99.9	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-43	176	GmaAffx.17756.1.S1_at	BE821217	-	-	9e-6	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please select
0.13	1e-38	161	Gma.6888.1.S1_at	BM178801	-	-	1e-3	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please select
0.02	5e-1	36	PsAffx.CL977Contig1_at	PsAffx.CL977Contig1	-	-	4e-2	At1g13470	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C14000126_at	PsAffx.C14000126	-	-	4e+0	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.88555.1.A1_at	CD390916	-	-	2e+0	At1g58180	carbonic anhydrase family protein / carbonate dehydratase family protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.86464.4.S1_at	BG045380	-	-	3e+0	At5g67410	unknown protein	C.G.	S.X.	Please select
0.00	8e+0	32	PsAffx.C80000017_at	PsAffx.C80000017	-	-	4e-1	At4g26640	WRKY20	C.G.	S.X.	Please select
0.02	8e+0	32	PsAffx.C66000049_at	PsAffx.C66000049	-	-	7e+0	At5g03550	-	C.G.	S.X.	Please select
0.01	8e+0	32	PsAffx.C29000004_at	PsAffx.C29000004	-	-	5e-2	At1g22230	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-10	65	Arabidopsis thaliana	At5g18860	832004	inosine-uridine preferring nucleoside hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-1	34	Hordeum vulgare	HK03G15r_at	HK03G15r	-	-	8e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.08	5e-2	40	Oryza sativa	Os05g0406200	9633.m03104	-	Inosine/uridine-preferring nucleoside hydrolasedomain containing protein	3e-4	At5g18860	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-22	107	Populus trichocarpa	PtpAffx.208346.1.S1_s_at	pmrna16593	hypothetical protein	-	1e-2	At5g18860	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.112688.1.S1_at	CA621898	-	-	4e+0	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621129_at	CF205522.1	-	-	7e-1	At2g02060	transcription factor	C.G.	S.X.	Please select
0.03	4e-2	38	Zea mays	Zm.10730.1.A1_at	AY106276.1	hypothetical protein LOC100276831	-	5e+0	At5g19315	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage