Gene omics information

Query gene ID	GmaAffx.82713.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	GmaAffx.82713.1.S1_at	BM308798	-	-	5e-6	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.70422.1.S1_at	CA938710	-	-	1e+0	At1g20010	TUB5	S.X.	H.G.	Please select
0.53	74.2	Gma.15969.1.S1_at	BM178705	-	-	2e-17	At5g63860	UVR8 (UVB-RESISTANCE 8)	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.63395.2.S1_s_at	BF597240	-	-	2e-1	At1g49310	unknown protein	S.X.	H.G.	Please select
0.41	58.1	Gma.3754.2.S1_at	AW156404	-	-	4e-16	At3g18430	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.31	42.2	Gma.13316.2.S1_a_at	CA935957	-	-	3e-1	At3g13340	WD-40 repeat family protein	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.76624.1.S1_at	CA939046	-	-	6e-10	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.10	13.0	GmaAffx.55210.2.S1_at	BE330623	-	-	3e-32	At2g43070	protease-associated (PA) domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	98.0	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293882	33_3082.2E.SLE2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293859	12_2234.2E.R077P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293431	21_C094.1R.SLR1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293876	28_3086.2E.SLE3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293731	65_2116.2C.R115P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292757	20_1420.1K.R259P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293879	30_2202.2E.R190P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM294405	62_3164.2J.SLJ1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293051	53_C022.1N.SLN1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-3	42	GmaAffx.16453.1.S1_at	AW351097	-	-	4e+0	At5g40700	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.1999.1.S1_at	CA783247	-	-	2e-11	At1g10400	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.00	6e+0	32	PsAffx.C43000021_at	PsAffx.C43000021	-	-	5e-2	At5g44570	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	HgAffx.20516.1.S1_at	BI749237	-	-	7e-1	At5g66230	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.79459.1.S1_at	CB063669	-	-	8e-1	At4g22740	glycine-rich protein	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.38779.1.S1_at	AW184929	-	-	3e+0	At3g50800	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.23706.1.S1_at	BM522410	-	-	8e-1	At1g47990	ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.10298.1.S1_at	BQ628504	-	-	3e+0	At4g04260	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please select
0.02	6e+0	32	Gma.18037.1.S1_at	BU549263	-	-	2e-56	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	5e-6	52	Arabidopsis thaliana	At3g02600	821299	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	Encodes phosphatidic acid phosphatase. Expressed during germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	34	Hordeum vulgare	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.05	1e-4	48	Oryza sativa	Os01g0139600	AK073130.1	-	Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase)	3e-3	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-6	52	Populus trichocarpa	PtpAffx.202610.1.S1_at	pmrna5222	hypothetical protein	-	2e-25	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	TaAffx.27403.1.S1_at	CA677254	-	-	8e+0	At3g02290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.6521.1.A1_at	AW067094	protein binding protein	-	7e-5	At1g68820	membrane protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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