Gene omics information

Query gene ID	GmaAffx.82626.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.82626.1.S1_at	BM108148	-	-	1e+0	At5g25600	-	S.X.	H.G.	Please select
0.73	88.9	Gma.7924.3.S1_a_at	BI787925	-	-	2e-3	At4g24290	-	S.X.	H.G.	Please select
0.67	86.1	Gma.16425.3.S1_s_at	AW508123	-	-	9e-1	At1g38790	unknown protein	S.X.	H.G.	Please select
0.63	82.9	Gma.7924.3.S1_at	BI787925	-	-	2e-3	At4g24290	-	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.85183.1.S1_at	BE473465	-	-	2e-6	At1g71070	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.62269.1.S1_at	BU766031	-	-	3e-1	At1g22280	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	99.0	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.2	98.6	GSM244934	9_SLO.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.1	98.5	GSM292845	24_1445.1L.R272L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM244797	14_VP9.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.8	97.9	GSM293273	58_1539.1P.R050L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292359	28_C099.1F.V7F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.4	97.6	GSM292287	34_1171.1E.R106L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM292793	53_C197.1K.R9K3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	GmaAffx.67459.1.S1_at	AW733922	-	-	2e-2	At2g44870	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.80409.1.S1_at	AW620804	-	-	5e-3	At5g42750	BKI1 (BRI1 kinase inhibitor 1)	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.6701.3.S1_a_at	AW307481	-	-	6e-18	At5g61670	-	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.3899.1.A1_at	AW307194	-	-	5e-2	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.305.1.S1_at	BM568357	-	-	5e-82	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.2505.2.S1_x_at	BU548684	-	-	2e-22	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.2505.2.S1_at	BU548684	-	-	2e-22	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.997.1.S1_at	BG363059	-	-	8e-1	At2g27535	ribosomal protein L10A family protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.78965.1.S1_s_at	BI424889	-	-	3e+0	At5g61605	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g25600	832635	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	36	Hordeum vulgare	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os07g0439600	9635.m02474	-	-	2e+0	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.211489.1.S1_at	pmrna22517	histone deacetylase complex protein	-	3e-3	At4g15680	glutaredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.31731.1.S1_at	CA609010	-	-	7e-1	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620849_at	CF512962	-	-	7e-8	At3g45630	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.6451.2.S1_a_at	AI770434	-	-	2e-4	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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