CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.82598.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 GmaAffx.82598.2.S1_at BM143186 - - 8e-8 At5g59830 unknown protein S.X. H.G.
0.60 80.7 Gma.7733.2.S1_a_at AI930986 - - 6e-16 At3g55070 - S.X. H.G.
0.46 65.5 GmaAffx.9211.1.S1_at BM523775 - - 6e+0 At5g45620 26S proteasome regulatory subunit, putative (RPN9) S.X. H.G.
0.44 63.3 Gma.2063.1.S1_at AB070857.2 aspartic proteinase 2 - 2e-8 At1g11910 aspartyl protease family protein S.X. H.G.
0.33 46.1 GmaAffx.91054.1.S1_at CF806779 - - 2e-8 At1g04230 unknown protein S.X. H.G.
0.22 28.1 GmaAffx.34491.1.S1_at BE820865 - - 9e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.2 96.0 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0 95.6 GSM293604 34_2072.2B.R303P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293639 66_2084.2B.R288P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM292195 57_1024.1A.R013P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM293718 53_2144.2C.R109P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM292603 32_1362.1I.R226P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM293586 18_2092.2B.R298P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM292512 28_1284.1H.R180P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM293724 59_2130.2C.R207P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM294124 79_2322.2G.R006P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-19 95 GmaAffx.82598.1.S1_at BU083489 - - 3e-16 At5g59830 unknown protein C.G. S.X.
0.04 4e-1 36 GmaAffx.81750.1.S1_at AW306336 - - 4e-1 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) C.G. S.X.
0.04 4e-1 36 GmaAffx.81750.2.S1_at BM568090 - - 4e-9 At1g19700 BEL10 (BEL1-LIKE HOMEODOMAIN 10) C.G. S.X.
0.02 4e-1 36 Gma.4128.1.S1_at BI968698 - - 1e-42 At3g27020 YSL6 (YELLOW STRIPE LIKE 6) C.G. S.X.
0.02 2e+0 34 PsAffx.C131000013_s_at PsAffx.C131000013 - - 7e-1 At1g12840 DET3 (DE-ETIOLATED 3) C.G. S.X.
0.02 2e+0 34 Gma.9828.1.S1_at AF529301.1 hypothetical LOC547648 - 4e-5 At2g32150 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 2e+0 34 Gma.1248.1.S1_s_at AJ518837.1 nod33 protein - 6e-1 At2g32150 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 2e+0 34 Gma.10933.2.S1_a_at CD397232 - - 4e-1 At3g26740 CCL (CCR-LIKE) C.G. S.X.
0.01 6e+0 32 PsAffx.C50000023_at PsAffx.C50000023 - - 1e+0 At5g56520 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-8 57 Arabidopsis thaliana At5g59830 836104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 3e-2 38 Hordeum vulgare HVSMEl0018D08f2_at HVSMEl0018D08f2 - - 1e+0 At3g57340 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 6e-1 36 Oryza sativa OsAffx.25323.1.S1_at - - - 0 C.G. S.X.
0.19 4e-32 139 Populus trichocarpa PtpAffx.2134.1.A1_at CV259487 hypothetical protein - 1e-16 At5g59830 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.11888.2.S1_at BQ170995 - - 4e+0 At2g17556 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1610538_at BQ796215 hypothetical protein LOC100260291 - 3e-1 At1g60740 peroxiredoxin type 2, putative C.G. S.X.
0.02 8e+0 30 Zea mays Zm.7103.1.S1_at BM335919 - - 6e-57 At4g24820 26S proteasome regulatory subunit, putative (RPN7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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