CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.82.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 GmaAffx.82.1.S1_at CD415578 - - 9e-8 At3g10210 - S.X. H.G.
0.61 81.8 GmaAffx.61984.1.S1_at BM523130 - - 4e-9 At5g18810 SCL28 S.X. H.G.
0.50 71.7 GmaAffx.84359.1.S1_at BM955089 - - 7e-9 At3g55460 SCL30 S.X. H.G.
0.40 57.1 GmaAffx.15284.1.S1_at BE822730 - - 6e+0 At1g21880 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) S.X. H.G.
0.40 57.1 GmaAffx.82131.1.S1_at BQ473196 - - 2e-2 At4g14860 atofp11 (Arabidopsis thaliana ovate family protein 11) S.X. H.G.
0.21 26.6 GmaAffx.22482.1.S1_x_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.9 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.8 98.4 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.1 98.1 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0 98.0 GSM293480 66_C092.1R.R9R1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6 97.7 GSM293105 20_C054.1O.R9O3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 GmaAffx.92029.1.S1_at CF807754 - - 3e-7 At1g06200 serine-type peptidase C.G. S.X.
0.04 1e-1 38 GmaAffx.92029.1.S1_s_at CF807754 - - 3e-7 At1g06200 serine-type peptidase C.G. S.X.
0.01 5e-1 36 PsAffx.C46000017_at PsAffx.C46000017 - - 2e-1 At2g26500 cytochrome b6f complex subunit (petM), putative C.G. S.X.
0.01 5e-1 36 PsAffx.C34000110_at PsAffx.C34000110 - - 4e-3 At2g31370 bZIP transcription factor (POSF21) C.G. S.X.
0.01 5e-1 36 PsAffx.C261000003_at PsAffx.C261000003 - - 4e+0 At3g09800 protein binding C.G. S.X.
0.01 2e+0 34 PsAffx.C47000025_at PsAffx.C47000025 - - 7e+0 At5g55640 unknown protein C.G. S.X.
0.03 2e+0 34 HgAffx.9977.1.S1_at CB378524 - - 1e+0 At1g68907 - C.G. S.X.
0.01 8e+0 32 PsAffx.CL99Contig1_at PsAffx.CL99Contig1 - - 1e+0 At1g06330 copper-binding family protein C.G. S.X.
0.03 8e+0 32 PsAffx.CL44Contig1_s_at PsAffx.CL44Contig1 - - 2e-11 At1g70600 structural constituent of ribosome C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 9e-8 57 Arabidopsis thaliana At3g10210 820183 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.03 4e-2 38 Hordeum vulgare Contig12082_at Contig12082 - - 3e-5 At4g35750 Rho-GTPase-activating protein-related C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.24009.1.S1_at - - - 0 C.G. S.X.
0.19 2e-21 103 Populus trichocarpa Ptp.3646.1.S1_s_at CV267919 hypothetical protein - 4e-14 At3g10210 - C.G. S.X.
0.05 9e-5 48 Triticum aestivum Ta.8336.1.S1_at BQ161756 - - 8e+0 At5g06270 unknown protein C.G. S.X.
0.28 1e-25 115 Vitis vinifera 1611002_s_at CB969717 hypothetical protein LOC100246998 - 6e-13 At3g10210 - C.G. S.X.
0.02 6e-1 34 Zea mays Zm.6643.1.S1_at BM080215 hypothetical protein LOC100278234 - 3e-2 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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