Gene omics information

Query gene ID	GmaAffx.8120.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	78.8	GmaAffx.8120.1.A1_at	BE660168	-	-	3e+0	At5g52965	unknown protein	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.81485.1.S1_at	BF598874	-	-	4e-12	At5g49360	BXL1 (BETA-XYLOSIDASE 1)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.8120.1.S1_at	BE660168	-	-	3e+0	At5g52965	unknown protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.93483.1.S1_s_at	CF809208	-	-	1e-21	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.82746.1.S1_at	BQ785779	-	-	5e-1	At5g18720	-	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.93435.1.S1_at	CF809160	-	-	4e+0	At3g24690	-	S.X.	H.G.	Please select
0.25	32.6	Gma.10915.1.S1_at	BM522407	-	-	1e-12	At5g49360	BXL1 (BETA-XYLOSIDASE 1)	S.X.	H.G.	Please select
0.23	29.9	GmaAffx.33518.1.S1_at	BU760871	-	-	2e-26	At3g13750	BGAL1 (Beta galactosidase 1)	S.X.	H.G.	Please select
0.21	26.6	GmaAffx.39591.1.S1_at	AW759446	-	-	3e+0	At5g43175	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.11	14.2	Gma.15465.1.S1_at	BM886273	-	-	2e+0	At3g17460	PHD finger family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.5	99.9	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
57.0	99.9	GSM294489	54_3198.2K.R9K3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
43.8	99.9	GSM293271	56_C056.1P.V7P1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.7	99.9	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.3	99.9	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
31.8	99.9	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
30.1	99.8	GSM293425	16_C106.1R.V7R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.7	99.8	GSM292596	26_C146.1I.V7I1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.6	99.8	GSM292635	62_C155.1I.V7I2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.4	99.8	GSM294397	55_2458.2J.R073P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	632	GmaAffx.8120.1.S1_at	BE660168	-	-	3e+0	At5g52965	unknown protein	C.G.	S.X.	Please select
0.05	1e-2	40	GmaAffx.15182.1.A1_at	BU548457	-	-	3e-1	At5g03905	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.04	6e-2	38	GmaAffx.84250.1.S1_at	BE440474	SGT1-1	-	3e-1	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	C.G.	S.X.	Please select
0.05	6e-2	38	GmaAffx.55766.1.S1_x_at	BQ079492	-	-	8e-1	At3g48420	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.05	6e-2	38	GmaAffx.55766.1.S1_at	BQ079492	-	-	8e-1	At3g48420	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.04	2e-1	36	GmaAffx.73235.1.S1_at	BI785559	-	-	5e-3	At5g22680	-	C.G.	S.X.	Please select
0.03	2e-1	36	Gma.1160.1.S1_at	AB062755.1	ferritin	-	1e-51	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.03	2e-1	36	Gma.1160.1.S1_s_at	AB062755.1	ferritin	-	1e-51	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.01	9e-1	34	PsAffx.C104000043_at	PsAffx.C104000043	-	-	2e+0	At2g39855	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g52965	835374	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	32	Hordeum vulgare	HM10C10r_at	HM10C10r	-	-	9e+0	At5g15160	bHLH family protein	C.G.	S.X.	Please select
0.03	3e-1	36	Oryza sativa	Os02g0122500	BQ908554	-	Conserved hypothetical protein	9e-1	At1g55546	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	9e-1	34	Populus trichocarpa	PtpAffx.111725.1.S1_at	BU819606	NAC domain protein, IPR003441	-	5e+0	At5g37050	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.84069.1.S1_at	CA645540	-	-	3e+0	At2g32960	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.05	8e-1	32	Vitis vinifera	1612849_at	CF404095	-	-	7e+0	At5g66800	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.15850.1.S1_at	BM381062	metallothionein-like protein type 2	-	4e-7	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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