CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.81052.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.81052.2.S1_at BM528722 - - 6e-39 At3g58500 PP2A-3 (PROTEIN PHOSPHATASE 2A-3) S.X. H.G.
0.53 74.2 GmaAffx.11850.2.S1_at BQ630681 - - 8e-18 At4g32850 nPAP (NUCLEAR POLY(A) POLYMERASE) S.X. H.G.
0.50 71.7 GmaAffx.82623.1.S1_at BE059190 - - 3e-64 At5g28850 calcium-binding EF hand family protein S.X. H.G.
0.43 60.6 GmaAffx.75287.1.S1_at BM086047 - - 2e-1 At4g01000 ubiquitin family protein S.X. H.G.
0.40 57.1 Gma.8643.2.S1_at BG652817 - - 1e-9 At3g09740 SYP71 (SYNTAXIN OF PLANTS 71) S.X. H.G.
0.25 32.6 Gma.4995.2.S1_at AW830184 - - 3e-4 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 97.5 GSM294293 45_3162.2I.R9I3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293419 10_C108.1R.R9R3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM292843 22_C214.1L.V7L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM294130 84_2328.2G.R265P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM294236 85_3128.2H.SLH1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-51 202 Gma.2620.1.S1_at BU545353 - - 4e-64 At2g42500 PP2A-4 C.G. S.X.
0.10 9e-11 67 Gma.5883.1.S1_at CD396478 - - 7e-115 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) C.G. S.X.
0.09 9e-11 67 Gma.5883.1.S1_a_at CD396478 - - 7e-115 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) C.G. S.X.
0.06 6e-9 61 GmaAffx.81052.1.S1_at AW832465 - - 7e-30 At2g42500 PP2A-4 C.G. S.X.
0.09 2e-8 59 GmaAffx.90260.1.S1_s_at CF805985 - - 5e-136 At1g50370 serine/threonine protein phosphatase, putative C.G. S.X.
0.09 2e-8 59 GmaAffx.90260.1.S1_at CF805985 - - 5e-136 At1g50370 serine/threonine protein phosphatase, putative C.G. S.X.
0.07 5e-3 42 GmaAffx.80742.2.S1_at BM892071 - - 2e-36 At1g64040 TOPP3 C.G. S.X.
0.04 5e-3 42 GmaAffx.80742.1.S1_at BE474303 - - 8e-68 At4g11240 TOPP7 C.G. S.X.
0.04 8e-2 38 GmaAffx.72708.1.S1_at BG509139 - - 8e-26 At2g39840 TOPP4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 6e-39 161 Arabidopsis thaliana At3g58500 825019 PP2A-3 (PROTEIN PHOSPHATASE 2A-3) encodes the third isoform of the catalytic subunit of protein phosphatase 2A. - - - C.G. S.X.
0.16 3e-48 190 Hordeum vulgare Contig15575_at Contig15575 - - 3e-139 At2g42500 PP2A-4 C.G. S.X.
0.19 3e-42 173 Oryza sativa Os10g0410600 NM_196453.1 - Serine/threonine protein phosphatase PP2A-4catalytic subunit (EC 3.1.3.16) 2e-83 At3g58500 PP2A-3 (PROTEIN PHOSPHATASE 2A-3) C.G. S.X.
0.28 1e-46 186 Populus trichocarpa PtpAffx.119547.1.S1_s_at BP928546 hypothetical protein - 1e-89 At2g42500 PP2A-4 C.G. S.X.
0.28 9e-32 137 Triticum aestivum Ta.6553.2.S1_a_at CA593784 - - 5e-49 At3g58500 PP2A-3 (PROTEIN PHOSPHATASE 2A-3) C.G. S.X.
0.07 2e-8 57 Vitis vinifera 1615735_at CD797265 hypothetical protein LOC100259271 - 0 At1g50370 serine/threonine protein phosphatase, putative C.G. S.X.
0.15 1e-38 159 Zea mays Zm.9014.1.S1_a_at CK347434 PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2 /// PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2 - 7e-100 At2g42500 PP2A-4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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