Gene omics information

Query gene ID	GmaAffx.80066.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.8	GmaAffx.80066.2.S1_at	BF598100	-	-	1e-2	At4g13640	UNE16 (unfertilized embryo sac 16)	S.X.	H.G.	Please select
0.62	82.1	GmaAffx.81425.1.S1_at	BG352513	-	-	2e-12	At2g28600	ATP binding / ATP-dependent helicase/ nucleic acid binding	S.X.	H.G.	Please select
0.59	79.5	Gma.7420.2.S1_a_at	AI460913	-	-	3e-56	At1g17370	UBP1B (oligouridylate binding protein 1B)	S.X.	H.G.	Please select
0.54	74.8	GmaAffx.90275.1.S1_at	CF806000	-	-	8e-2	At3g13460	ECT2	S.X.	H.G.	Please select
0.53	74.2	Gma.1752.3.S1_a_at	AW569205	-	-	5e-2	At4g04860	DER2.2 (DERLIN-2.2)	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.83698.1.S1_at	BU965056	-	-	1e-72	At1g50920	GTP-binding protein-related	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.92822.1.S1_s_at	CF808547	-	-	9e-2	At1g57780	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.34241.1.S1_at	BU089662	-	-	1e-2	At1g54080	oligouridylate-binding protein, putative	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.80509.1.S1_at	BQ610707	-	-	2e-1	At5g63520	-	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	99.0	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM292374	48_C094.1F.R9F1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM293877	29_3084.2E.R9E2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM294133	87_2304.2G.R142P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM293865	18_2200.2E.R004P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292679	29_C166.1J.R9J1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292599	29_1350.1I.R220P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	8e-70	264	GmaAffx.80066.1.S1_at	BM955055	-	-	5e-4	At1g79430	APL (ALTERED PHLOEM DEVELOPMENT)	C.G.	S.X.	Please select
0.06	5e-6	52	Gma.6093.1.S1_at	BE657331	-	-	2e-1	At4g13640	UNE16 (unfertilized embryo sac 16)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C147000010_at	PsAffx.C147000010	-	-	3e+0	At2g13650	GONST1 (Golgi Nucleotide Sugar Transporter 1)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.42064.1.S1_at	BM892548	-	-	8e-1	At5g18362	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.24357.1.A1_at	BU544827	-	-	3e-4	At3g26935	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C59000046_at	PsAffx.C59000046	-	-	4e-1	At5g49560	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C32000046_at	PsAffx.C32000046	-	-	8e-3	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C296000008_at	PsAffx.C296000008	-	-	3e-1	At2g36740	SWC2	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C284000006_s_at	PsAffx.C284000006	-	-	3e+0	At4g35580	NTL9 (NAC transcription factor-like 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	40	Arabidopsis thaliana	At4g13640	826998	UNE16 (unfertilized embryo sac 16)	F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	Contig8526_at	Contig8526	-	-	5e-1	At5g14430	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	OsAffx.1186.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.222809.1.S1_at	pmrna40474	hypothetical protein	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	34	Triticum aestivum	TaAffx.30873.1.S1_at	CA621459	-	-	2e+0	At4g21920	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1612989_at	CB971972	hypothetical protein LOC100266919	-	7e-8	At3g26900	shikimate kinase family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.19092.1.A1_at	CO534974	hypothetical protein LOC100279368	-	1e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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