Gene omics information

Query gene ID	GmaAffx.80018.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.80018.1.S1_at	BF071726	-	-	1e-22	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.18	22.3	Gma.12707.2.S1_at	BM891742	-	-	3e+0	At5g10310	unknown protein	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.86812.1.S1_at	BU763556	-	-	3e-8	At5g42520	ATBPC6	S.X.	H.G.	Please select
0.12	15.1	Gma.7945.1.S1_at	BU551250	-	-	2e-36	At5g16040	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.12516.1.S1_at	AW277285	-	-	3e-4	At3g58460	ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.84623.1.S1_at	BQ298236	-	-	1e-12	At1g05500	NTMC2T2.1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.1	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292816	74_1424.1K.R261P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292886	61_1483.1L.R292U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293565	78_2006.2A.R146P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293894	44_2206.2E.R018P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293568	80_2032.2A.R152P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292626	54_1342.1I.R214P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293889	3_2205.2E.R018U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	PsAffx.C78000055_at	PsAffx.C78000055	-	-	1e+1	At5g59616	protein kinase-related	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C47000081_at	PsAffx.C47000081	-	-	6e+0	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.6855.1.S1_at	CB825356	-	-	1e+0	At4g30993	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.85527.1.S1_at	BE607970	-	-	4e+0	At3g01329	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.47222.1.S1_at	BU760787	-	-	4e-1	At3g09830	protein kinase, putative	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.22422.1.S1_at	BM892319	-	-	3e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.1769.1.S1_at	BE658650	-	-	1e-1	At3g01516	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Gma.159.1.S1_s_at	X95582.1	G protein	-	1e-76	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.psHB024xB23f_at	PsAffx.psHB024xB23f	-	-	4e-1	At5g26990	drought-responsive family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	1e-22	107	Arabidopsis thaliana	At3g02510	821100	regulator of chromosome condensation (RCC1) family protein	F:chromatin binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	7e-10	63	Hordeum vulgare	Contig6068_at	Contig6068	-	-	2e-14	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.08	3e-6	54	Oryza sativa	Os08g0430700	AK101681.1	-	Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein	1e-5	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	4e-66	252	Populus trichocarpa	PtpAffx.215447.1.S1_at	pmrna29646	hypothetical protein	-	4e-73	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-5	50	Triticum aestivum	Ta.14519.1.S1_x_at	BJ309786	-	-	4e-15	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.14	1e-19	95	Vitis vinifera	1613080_at	CD798687	hypothetical protein LOC100265192	-	6e-53	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Zea mays	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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