Gene omics information

Query gene ID	GmaAffx.78968.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	GmaAffx.78968.2.S1_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.78968.1.S1_at	BE820570	-	-	2e-12	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.62448.1.S1_at	AW781631	-	-	3e+0	At4g03510	RMA1	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.78968.2.S1_s_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.37	51.7	GmaAffx.59154.1.S1_at	BG508624	-	-	7e+0	At4g37685	unknown protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.93046.1.S1_at	CF808771	-	-	3e-1	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	99.3	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.5	98.9	GSM293798	41_2147.2D.R010U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM292339	85_1171.1E.R106U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM293521	38_2003.2A.R270L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM292420	23_1251.1G.R158U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM292487	84_1251.1G.R158L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM292473	71_C111.1G.R9G1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM292419	22_1252.1G.R158P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM292320	68_1189.1E.R115U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM292370	44_1227.1F.R139U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	GmaAffx.78968.2.S1_s_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.58	2e-138	492	GmaAffx.78968.1.S1_at	BE820570	-	-	2e-12	At5g39670	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.CL1189Contig1_at	PsAffx.CL1189Contig1	-	-	1e-1	At4g29330	DER1 (DERLIN-1)	C.G.	S.X.	Please select
0.05	1e+0	34	GmaAffx.43578.2.S1_at	BE821817	-	-	2e-8	At3g08950	electron transport SCO1/SenC family protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.CL1209Contig1_at	PsAffx.CL1209Contig1	-	-	6e+0	At4g03350	ubiquitin family protein	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C76000059_at	PsAffx.C76000059	-	-	8e-1	At4g31460	ribosomal protein L28 family protein	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C48000065_at	PsAffx.C48000065	-	-	9e-1	At5g64290	DIT2.1 (DICARBOXYLATE TRANSPORT 2.1)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C140000026_at	PsAffx.C140000026	-	-	2e-1	At4g05497	F-box family protein	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C120000002_at	PsAffx.C120000002	-	-	7e-1	At5g33390	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	9e-13	73	Arabidopsis thaliana	At5g39670	833963	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	34	Hordeum vulgare	Contig6025_at	Contig6025	-	-	6e-2	At4g28610	PHR1 (PHOSPHATE STARVATION RESPONSE 1)	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.7223.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-8	59	Populus trichocarpa	PtpAffx.207860.1.S1_at	pmrna15606	hypothetical protein	-	1e-6	At5g39670	calcium-binding EF hand family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.87098.1.S1_at	CA595833	-	-	1e+0	At4g14805	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	C.G.	S.X.	Please select
0.19	4e-12	69	Vitis vinifera	1618075_at	CA811189	hypothetical protein LOC100249271	-	1e+0	At5g40500	unknown protein	C.G.	S.X.	Please select
0.04	9e-2	36	Zea mays	Zm.8832.1.A1_at	BM267629	hypothetical protein LOC100274764	-	5e+0	At4g23450	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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