Gene omics information

Query gene ID	GmaAffx.78677.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	GmaAffx.78677.2.S1_at	BQ740303	-	-	8e-1	At1g48912	unknown protein	S.X.	H.G.	Please select
0.66	84.0	GmaAffx.43702.1.S1_at	AW309184	-	-	8e-1	At4g11385	unknown protein	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.66333.1.S1_at	AW200709	-	-	4e-19	At5g15120	unknown protein	S.X.	H.G.	Please select
0.49	68.3	GmaAffx.79189.1.S1_at	BF596987	-	-	2e-11	At5g39890	unknown protein	S.X.	H.G.	Please select
0.46	65.5	Gma.17177.1.S1_at	BG551593	-	-	6e-9	At5g41560	-	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.8320.1.S1_at	BG157576	-	-	4e-13	At1g79440	ALDH5F1	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.93612.1.S1_s_at	CF806622	-	-	1e-53	At1g78720	protein transport protein sec61, putative	S.X.	H.G.	Please select
0.29	39.0	Gma.2987.1.S1_at	CD393690	-	-	2e-4	At2g02510	unknown protein	S.X.	H.G.	Please select
0.29	39.0	Gma.17732.1.S1_x_at	AW100760	-	-	3e-1	At2g43510	ATTI1	S.X.	H.G.	Please select
0.26	33.9	Gma.5576.1.S1_a_at	CD417924	MnSOD	-	7e-16	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.5	99.9	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
18.2	99.7	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.4	99.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
12.5	99.5	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
11.9	99.4	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
10.8	99.4	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
9.7	99.3	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
9.7	99.3	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
7.1	98.8	GSM292832	12_C213.1L.V7L3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	HgAffx.13943.1.S1_at	CB373990	-	-	9e-1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e-1	36	GmaAffx.88279.1.S1_at	AW759417	-	-	5e-38	At2g46090	diacylglycerol kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C290000003_at	PsAffx.C290000003	-	-	7e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C168000012_at	PsAffx.C168000012	-	-	6e-1	At3g50240	KICP-02	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.79886.1.S1_at	BE347350	-	-	9e-1	At2g04925	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.78481.1.S1_at	BM520620	-	-	7e-15	At4g25280	adenylate kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.63297.2.S1_at	BM892069	-	-	2e-32	At4g27680	MSP1 protein, putative / intramitochondrial sorting protein, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.8480.1.S1_at	AF175394.1	resistance protein LM12	-	7e-4	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.6296.2.S1_at	CD392554	-	-	8e-2	At3g10400	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	8e-1	34	Arabidopsis thaliana	At1g48912	6241229	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Hordeum vulgare	HVSMEb0008G01r2_at	HVSMEb0008G01r2	-	-	5e-1	At4g18170	WRKY28	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os09g0369400	CR286273	-	Trehalose-6-phosphate phosphatase	2e+1	At5g50090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-2	38	Populus trichocarpa	PtpAffx.150547.1.S1_at	CN521037	hypothetical protein	-	1e-22	At5g16150	PGLCT (PLASTIDIC GLC TRANSLOCATOR)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.81428.1.S1_at	CA686179	-	-	4e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1619958_at	CF515517	-	-	4e+0	At3g17611	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	C.G.	S.X.	Please select
0.05	3e-1	34	Zea mays	Zm.17084.1.S1_at	BE056028	-	-	3e+0	At2g40020	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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